6N8N | pdb_00006n8n

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth E]SCOP2B SuperfamilyTranslational proteins 8078363 3000811 SCOP2B (2022-06-29)
J [auth F]SCOP2B SuperfamilyRibosomal protein L4 8052816 3001146 SCOP2B (2022-06-29)
J [auth F]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like 8052815 3002143 SCOP2B (2022-06-29)
K [auth G]SCOP2B SuperfamilyTranslational machinery components 8052875 3000571 SCOP2B (2022-06-29)
L [auth H]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053109 3000334 SCOP2B (2022-06-29)
M [auth I]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8052917 3001378 SCOP2B (2022-06-29)
M [auth I]SCOP2B SuperfamilyRibosomal L30p/L7e protein, N-terminal domain-lke 8052916 3002152 SCOP2B (2022-06-29)
N [auth J]SCOP2B SuperfamilyL30e-like 8063962 3001739 SCOP2B (2022-06-29)
Q [auth N]SCOP2B SuperfamilyRibosomal protein L13e-like 8053159 3002162 SCOP2B (2022-06-29)
T [auth R]SCOP2B SuperfamilyZn-binding ribosomal proteins 8103126 3001320 SCOP2B (2022-06-29)
V [auth a]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8082481 3000210 SCOP2B (2022-06-29)
W [auth b]SCOP2B SuperfamilyRibosomal protein L13 8066053 3001134 SCOP2B (2022-06-29)
Y [auth d]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8095970 3001045 SCOP2B (2022-06-29)
Z [auth e]SCOP2B SuperfamilyRibosomal protein L19 (L19e) 8077485 3000890 SCOP2B (2022-06-29)
CA [auth h]SCOP2B Superfamily60S Ribosomal protein L22e 8053058 3002158 SCOP2B (2022-06-29)
FA [auth k]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8095962 3000210 SCOP2B (2022-06-29)
GA [auth l]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076760 3000334 SCOP2B (2022-06-29)
IA [auth n]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8077127 3001045 SCOP2B (2022-06-29)
JA [auth o]SCOP2B SuperfamilyRibosomal protein L29e 8053045 3002157 SCOP2B (2022-06-29)
KA [auth p]SCOP2B SuperfamilyL30e-like 8039862 3001739 SCOP2B (2022-06-29)
OA [auth t]SCOP2B SuperfamilyRibosomal protein L34e-like 8053547 3002203 SCOP2B (2022-06-29)
TA [auth y]SCOP2B SuperfamilyRibosomal protein L39e 8078549 3001756 SCOP2B (2022-06-29)
E [auth X]SCOP2B SuperfamilyPentein 8036230 3000640 SCOP2B (2022-06-29)
SA [auth x]SCOP2B SuperfamilyRibosomal L38e protein-like 8053562 3002206 SCOP2B (2022-06-29)
RA [auth w]SCOP2B SuperfamilyZn-binding ribosomal proteins 8080044 3001320 SCOP2B (2022-06-29)
QA [auth v]SCOP2B SuperfamilyRibosomal protein L36e 8053115 3002161 SCOP2B (2022-06-29)
NA [auth s]SCOP2B SuperfamilyTranslational proteins 8087451 3000811 SCOP2B (2022-06-29)
HA [auth m]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053046 3000334 SCOP2B (2022-06-29)
DA [auth i]SCOP2B Superfamily50S Ribosomal protein L14-like 8103364 3000433 SCOP2B (2022-06-29)
X [auth c]SCOP2B SuperfamilyRibosomal protein L22 8076708 3001078 SCOP2B (2022-06-29)
P [auth M]SCOP2B SuperfamilyRL5-like 8073884 3001709 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth Y]Tfb4e6n8nY1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
F [auth W]AAAe6n8nW1 A: beta barrelsX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Family A G protein-coupled receptor-likeF: AAAECOD (v294.2)
H [auth D]Tfb4e6n8nD1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
I [auth E]Tfb4e6n8nE1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
J [auth F]Tfb4e6n8nF2 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
J [auth F]Ald_deCOasee6n8nF3 A: beta barrelsX: Rubredoxin-likeH: Ferritin/Heme oxygenaseT: Heme oxygenase/Ribonucleotide reductaseF: Ald_deCOaseECOD (v294.2)
K [auth G]Tfb4e6n8nG1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
L [auth H]Tfb4e6n8nH1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
M [auth I]Tfb4e6n8nI1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
N [auth J]Tfb4e6n8nJ1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
O [auth K]Tfb4e6n8nK1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
Q [auth N]Tfb4e6n8nN1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
R [auth O]Tfb4e6n8nO1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
S [auth Q]Tfb4e6n8nQ1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
T [auth R]Tfb4e6n8nR1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
V [auth a]Tfb4e6n8na1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
W [auth b]Tfb4e6n8nb1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
Y [auth d]Tfb4e6n8nd1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
Z [auth e]Tfb4e6n8ne1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
BA [auth g]Tfb4e6n8ng1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
CA [auth h]Tfb4e6n8nh1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
FA [auth k]Tfb4e6n8nk1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
GA [auth l]Tfb4e6n8nl1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
IA [auth n]Tfb4e6n8nn1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
JA [auth o]Tfb4e6n8no1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
KA [auth p]Tfb4e6n8np1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
LA [auth q]Tfb4e6n8nq1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
MA [auth r]Tfb4e6n8nr1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
OA [auth t]Tfb4e6n8nt1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
TA [auth y]Tfb4e6n8ny1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
UA [auth z]Tfb4e6n8nz1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
VA [auth L]Tfb4e6n8nL1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
G [auth V]MIF4Ge6n8nV1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: MIF4GECOD (v294.2)
E [auth X]Tfb4e6n8nX1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
SA [auth x]Tfb4e6n8nx1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
RA [auth w]Tfb4e6n8nw1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
QA [auth v]Tfb4e6n8nv1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
PA [auth u]Tfb4e6n8nu1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
NA [auth s]Tfb4e6n8ns1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
HA [auth m]Tfb4e6n8nm1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
EA [auth j]Tfb4e6n8nj1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
DA [auth i]Tfb4e6n8ni1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
AA [auth f]Tfb4e6n8nf1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
X [auth c]Tfb4e6n8nc1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)
P [auth M]Tfb4e6n8nM1 A: beta barrelsX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Tfb4ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
D [auth Y]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
F [auth W]PF0192650S ribosome-binding GTPase (MMR_HSR1)50S ribosome-binding GTPase- Family
F [auth W]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
H [auth D]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
H [auth D]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
I [auth E]PF01280Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e)Ribosomal protein L19e, N-terminal domainThis domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain
I [auth E]PF25476Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C)Ribosomal protein L19e, C-terminal domainThis domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain
J [auth F]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain
J [auth F]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
J [auth F]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain
K [auth G]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
K [auth G]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins. Domain
L [auth H]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
M [auth I]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
M [auth I]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
N [auth J]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24eDomain
N [auth J]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
O [auth K]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
O [auth K]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
Q [auth N]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
Q [auth N]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
R [auth O]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
R [auth O]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
R [auth O]PF00467KOW motif (KOW)KOW motif- Family
S [auth Q]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
S [auth Q]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
T [auth R]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
T [auth R]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
VA [auth L]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain
VA [auth L]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
VA [auth L]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domainDomain
VA [auth L]PF00467KOW motif (KOW)KOW motif- Family
G [auth V]PF21192NMD3 OB-fold domain (OB_NMD3)NMD3 OB-fold domainA key step in ribosome biogenesis is the nuclear export of pre-ribosomal particles. Nmd3, a highly conserved protein in eukaryotes, is a specific adaptor required for the export of pre-60S particles. This entry represents the third domain in NMD3 whi ...A key step in ribosome biogenesis is the nuclear export of pre-ribosomal particles. Nmd3, a highly conserved protein in eukaryotes, is a specific adaptor required for the export of pre-60S particles. This entry represents the third domain in NMD3 which adopts an OB-fold [1]. The OB of Nmd3 does not recognise 25S rRNA. Instead it interacts with two ribosomal proteins, eL42 and uL1 [1].
Domain
G [auth V]PF04981NMD3, second domain (NMD3)NMD3, second domainThe NMD3 protein is involved in nonsense mediated mRNA decay. This amino terminal region contains four conserved CXXC motifs that could be metal binding. NMD3 is involved in export of the 60S ribosomal subunit is mediated by the adapter protein Nmd3p ...The NMD3 protein is involved in nonsense mediated mRNA decay. This amino terminal region contains four conserved CXXC motifs that could be metal binding. NMD3 is involved in export of the 60S ribosomal subunit is mediated by the adapter protein Nmd3p in a Crm1p-dependent pathway [1]. This entry represents the second domain which may adopt a fold similar to that in TolB_N superfamily.
Domain
G [auth V]PF21193NMD3 SH3 domain (NMD_SH3)NMD3 SH3 domainA key step in ribosome biogenesis is the nuclear export of pre-ribosomal particles. Nmd3, a highly conserved protein in eukaryotes, is a specific adaptor required for the export of pre-60S particles. This entry represents the second domain in NMD3 wh ...A key step in ribosome biogenesis is the nuclear export of pre-ribosomal particles. Nmd3, a highly conserved protein in eukaryotes, is a specific adaptor required for the export of pre-60S particles. This entry represents the second domain in NMD3 which adopts an SH3-fold denoted as RBDII in [1]. The two short alpha-helices in RBDII participate in rRNA recognition [1].
Domain
G [auth V]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
E [auth X]PF01912eIF-6 family (eIF-6)eIF-6 familyThis family includes eukaryotic translation initiation factor 6 as well as presumed archaebacterial homologues. Domain
E [auth X]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein familyDomain
U [auth S]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35AeThis entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. Domain
PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
P [auth M]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein familyThe N-terminal region of the eukaryotic ribosomal L27 has the KOW motif. C-terminal region is represented by this family. Domain
P [auth M]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
P [auth M]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA---
5.8S rRNA---
D [auth Y]Tyrosine-protein phosphatase YVH1
F [auth W]Large subunit GTPase 1
H [auth D]60S ribosomal protein L2-A
I [auth E]60S ribosomal protein L3
J [auth F]60S ribosomal protein L4-A
K [auth G]60S ribosomal protein L5
L [auth H]60S ribosomal protein L6-A
M [auth I]60S ribosomal protein L7-A
N [auth J]60S ribosomal protein L8-A
O [auth K]60S ribosomal protein L9-A
Q [auth N]60S ribosomal protein L13-A
R [auth O]60S ribosomal protein L14-A
S [auth Q]60S ribosomal protein L42-A
T [auth R]60S ribosomal protein L43-A
V [auth a]60S ribosomal protein L15-A
W [auth b]60S ribosomal protein L16-A
Y [auth d]60S ribosomal protein L18-A
Z [auth e]60S ribosomal protein L19-A
BA [auth g]60S ribosomal protein L21-A
CA [auth h]60S ribosomal protein L22-A
FA [auth k]60S ribosomal protein L25
GA [auth l]60S ribosomal protein L26-A
IA [auth n]60S ribosomal protein L28
JA [auth o]60S ribosomal protein L29
KA [auth p]60S ribosomal protein L30
LA [auth q]60S ribosomal protein L31-A
MA [auth r]60S ribosomal protein L32
OA [auth t]60S ribosomal protein L34-A
TA [auth y]60S ribosomal protein L39
UA [auth z]Ubiquitin-60S ribosomal protein L40
VA [auth L]Ribosomal protein L12
G [auth V]60S ribosomal export protein NMD3
E [auth X]Eukaryotic translation initiation factor 6
SA [auth x]60S ribosomal protein L38
RA [auth w]60S ribosomal protein L37-A
QA [auth v]60S ribosomal protein L36-A
PA [auth u]60S ribosomal protein L35-A
NA [auth s]60S ribosomal protein L33-A
HA [auth m]60S ribosomal protein L27-A
EA [auth j]60S ribosomal protein L24-A
DA [auth i]60S ribosomal protein L23-A
AA [auth f]60S ribosomal protein L20-A
X [auth c]60S ribosomal protein L17-A
U [auth S]Ribosomal Protein uL1---
5S rRNA---
P [auth M]60S ribosomal protein L11-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth Y]IPR016278Dual specificity protein phosphatase 12Family
D [auth Y]IPR029021Protein-tyrosine phosphatase-likeHomologous Superfamily
D [auth Y]IPR000387Tyrosine-specific protein phosphatases domainDomain
D [auth Y]IPR020422Dual specificity protein phosphatase domainDomain
D [auth Y]IPR000340Dual specificity phosphatase, catalytic domainDomain
F [auth W]IPR043358Ras GTPase GNL1-likeFamily
F [auth W]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
F [auth W]IPR006073GTP binding domainDomain
F [auth W]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
H [auth D]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
H [auth D]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
H [auth D]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
H [auth D]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
H [auth D]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
H [auth D]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
H [auth D]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
H [auth D]IPR002171Large ribosomal subunit protein uL2Family
I [auth E]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
I [auth E]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
I [auth E]IPR000597Large ribosomal subunit protein uL3Family
I [auth E]IPR045077Large ribosomal subunit protein uL3, archaea/eukaryotaFamily
I [auth E]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
J [auth F]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
J [auth F]IPR002136Large ribosomal subunit protein uL4Family
J [auth F]IPR013000Large ribosomal subunit protein uL4, eukaryota/archaea, conserved siteConserved Site
J [auth F]IPR045240Large ribosomal subunit protein uL4, eukaryota/archaeaFamily
J [auth F]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
K [auth G]IPR057268Large ribosomal subunit protein uL18Family
K [auth G]IPR005485Large ribosomal subunit protein uL18, eukaryota/archaeaFamily
K [auth G]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
L [auth H]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
L [auth H]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
L [auth H]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
L [auth H]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
L [auth H]IPR000915Large ribosomal subunit protein eL6Family
M [auth I]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
M [auth I]IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
M [auth I]IPR005998Large ribosomal subunit protein uL30, eukaryotaFamily
M [auth I]IPR039699Large ribosomal subunit protein uL30Family
M [auth I]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotaDomain
M [auth I]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
M [auth I]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
N [auth J]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
N [auth J]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
N [auth J]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
N [auth J]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
N [auth J]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
N [auth J]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
O [auth K]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
O [auth K]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
O [auth K]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
O [auth K]IPR000702Large ribosomal subunit protein uL6-likeFamily
Q [auth N]IPR001380Large ribosomal subunit protein eL13Family
Q [auth N]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
R [auth O]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
R [auth O]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth O]IPR039660Large ribosomal subunit protein eL14Family
R [auth O]IPR002784Large ribosomal subunit protein eL14 domainDomain
R [auth O]IPR005824KOWDomain
S [auth Q]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
S [auth Q]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
S [auth Q]IPR000552Large ribosomal subunit protein eL42Family
T [auth R]IPR002674Large ribosomal subunit protein eL43Family
T [auth R]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
T [auth R]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
T [auth R]IPR050522Eukaryotic ribosomal protein eL43Family
V [auth a]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
V [auth a]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
V [auth a]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
V [auth a]IPR000439Large ribosomal subunit protein eL15Family
W [auth b]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
W [auth b]IPR005822Large ribosomal subunit protein uL13Family
W [auth b]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
W [auth b]IPR005755Large ribosomal subunit protein uL13, eukaryota/archaeaFamily
Y [auth d]IPR021131Large ribosomal subunit protein uL15/eL18Domain
Y [auth d]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
Y [auth d]IPR000039Large ribosomal subunit protein eL18Family
Y [auth d]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
Z [auth e]IPR039547Large ribosomal subunit protein eL19Family
Z [auth e]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
Z [auth e]IPR057260Ribosomal protein L19e, C-terminal domainDomain
Z [auth e]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
Z [auth e]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
Z [auth e]IPR057259Ribosomal protein L19e, N-terminal domainDomain
Z [auth e]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
Z [auth e]IPR000196Large ribosomal subunit protein eL19 domainDomain
BA [auth g]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
BA [auth g]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
BA [auth g]IPR001147Large ribosomal subunit protein eL21Family
BA [auth g]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CA [auth h]IPR002671Large ribosomal subunit protein eL22Family
CA [auth h]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
FA [auth k]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
FA [auth k]IPR013025Large ribosomal subunit protein uL23-likeFamily
FA [auth k]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
FA [auth k]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
FA [auth k]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
GA [auth l]IPR005756Large ribosomal subunit protein uL24, eukaryota_archaeaFamily
GA [auth l]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
GA [auth l]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
GA [auth l]IPR005824KOWDomain
GA [auth l]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
GA [auth l]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
IA [auth n]IPR021131Large ribosomal subunit protein uL15/eL18Domain
IA [auth n]IPR030878Large ribosomal subunit protein uL15Family
IA [auth n]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
IA [auth n]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
JA [auth o]IPR002673Large ribosomal subunit protein eL29Family
KA [auth p]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
KA [auth p]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
KA [auth p]IPR039109Large ribosomal subunit protein eL30-likeFamily
KA [auth p]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
LA [auth q]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
LA [auth q]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
LA [auth q]IPR000054Large ribosomal subunit protein eL31Family
MA [auth r]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
MA [auth r]IPR001515Large ribosomal subunit protein eL32Family
MA [auth r]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
OA [auth t]IPR008195Large ribosomal subunit protein eL34Family
OA [auth t]IPR038562Large ribosomal subunit protein eL34, C-terminal domain superfamilyHomologous Superfamily
OA [auth t]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
TA [auth y]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
TA [auth y]IPR000077Large ribosomal subunit protein eL39Family
TA [auth y]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
UA [auth z]IPR019954Ubiquitin conserved siteConserved Site
UA [auth z]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
UA [auth z]IPR000626Ubiquitin-like domainDomain
UA [auth z]IPR019956Ubiquitin domainDomain
UA [auth z]IPR050158Ubiquitin and ubiquitin-likeFamily
UA [auth z]IPR001975Large ribosomal subunit protein eL40 domainDomain
UA [auth z]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
VA [auth L]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
VA [auth L]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
VA [auth L]IPR000911Ribosomal protein uL11Family
VA [auth L]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
VA [auth L]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
VA [auth L]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
G [auth V]IPR007064Nmd3, N-terminalDomain
G [auth V]IPR04889960S ribosomal export protein NMD3, SH3 domainDomain
G [auth V]IPR04889860S ribosomal export protein NMD3, OB-fold domainDomain
G [auth V]IPR039768Ribosomal export protein Nmd3Family
E [auth X]IPR002769Translation initiation factor IF6Family
SA [auth x]IPR002675Large ribosomal subunit protein eL38Family
SA [auth x]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
RA [auth w]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
RA [auth w]IPR001569Large ribosomal subunit protein eL37Family
RA [auth w]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
RA [auth w]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
QA [auth v]IPR000509Large ribosomal subunit protein eL36Family
QA [auth v]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
PA [auth u]IPR001854Large ribosomal subunit protein uL29Family
PA [auth u]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
PA [auth u]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
PA [auth u]IPR045059Large ribosomal subunit protein uL29, eukaryotaFamily
NA [auth s]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
NA [auth s]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
NA [auth s]IPR001780Large ribosomal subunit protein eL33Family
NA [auth s]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
HA [auth m]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
HA [auth m]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
HA [auth m]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
HA [auth m]IPR001141Large ribosomal subunit protein eL27Family
HA [auth m]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
EA [auth j]IPR056366Large ribosomal subunit protein eL24Family
EA [auth j]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
EA [auth j]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
EA [auth j]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
DA [auth i]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
DA [auth i]IPR000218Large ribosomal subunit protein uL14Family
DA [auth i]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
AA [auth f]IPR028877Large ribosomal subunit protein eL20Family
AA [auth f]IPR023573Large ribosomal subunit protein eL20 domainDomain
AA [auth f]IPR021138Large ribosomal subunit protein eL20, eukaryotaFamily
X [auth c]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
X [auth c]IPR005721Large ribosomal subunit protein uL22, eukaryota/archaeaFamily
X [auth c]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
X [auth c]IPR001063Large ribosomal subunit protein uL22Family
P [auth M]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
P [auth M]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
P [auth M]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
P [auth M]IPR057266Large ribosomal subunit protein uL5, eukaryota/archaeaFamily
P [auth M]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
P [auth M]IPR002132Large ribosomal subunit protein uL5Family