6ND9 | pdb_00006nd9

RHODOCETIN IN COMPLEX WITH THE INTEGRIN ALPHA2-A DOMAIN WITH CALCIUM


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Id6nd9i_ Alpha and beta proteins (a/b) vWA-like vWA-like Integrin A (or I) domain automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ld6nd9l_ Alpha and beta proteins (a/b) vWA-like vWA-like Integrin A (or I) domain automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Rd6nd9r_ Alpha and beta proteins (a/b) vWA-like vWA-like Integrin A (or I) domain automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Od6nd9o_ Alpha and beta proteins (a/b) vWA-like vWA-like Integrin A (or I) domain automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd6nd9f_ Alpha and beta proteins (a/b) vWA-like vWA-like Integrin A (or I) domain automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd6nd9c_ Alpha and beta proteins (a/b) vWA-like vWA-like Integrin A (or I) domain automated matches Human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd6nd9b_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)
Ed6nd9e_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)
Kd6nd9k_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)
Nd6nd9n_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)
Qd6nd9q_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)
Hd6nd9h_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)
Gd6nd9g_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)
Pd6nd9p_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)
Md6nd9m_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)
Jd6nd9j_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)
Dd6nd9d_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)
Ad6nd9a_ Alpha and beta proteins (a+b) C-type lectin-like C-type lectin-like C-type lectin domain automated matches (Calloselasma rhodostoma ) [TaxId: 8717 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ISCOP2B SuperfamilyvWA-like 8041194 3000832 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyvWA-like 8041194 3000832 SCOP2B (2022-06-29)
RSCOP2B SuperfamilyvWA-like 8041194 3000832 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyvWA-like 8041194 3000832 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyvWA-like 8041194 3000832 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyvWA-like 8041194 3000832 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyC-type lectin-like 8065482 3001261 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyC-type lectin-like 8065482 3001261 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyC-type lectin-like 8065482 3001261 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyC-type lectin-like 8065482 3001261 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyC-type lectin-like 8065482 3001261 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyC-type lectin-like 8065482 3001261 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyC-type lectin-like 8065524 3001261 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyC-type lectin-like 8065524 3001261 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyC-type lectin-like 8065524 3001261 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyC-type lectin-like 8065524 3001261 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyC-type lectin-like 8065524 3001261 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyC-type lectin-like 8065524 3001261 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Ie6nd9I1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: C1-setF:ECOD (20:10:01)
Le6nd9L1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: C1-setF:ECOD (20:10:01)
Re6nd9R1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: C1-setF:ECOD (20:10:01)
Oe6nd9O1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: C1-setF:ECOD (20:10:01)
Fe6nd9F1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: C1-setF:ECOD (20:10:01)
Ce6nd9C1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: zf-B_boxF:ECOD (20:10:01)
Be6nd9B1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: zf-B_boxF:ECOD (20:10:01)
Ee6nd9E1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: C1-setF:ECOD (20:10:01)
Ke6nd9K1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: C1-setF:ECOD (20:10:01)
Ne6nd9N1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: C1-setF:ECOD (20:10:01)
Qe6nd9Q1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: C1-setF:ECOD (20:10:01)
He6nd9H1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: C1-setF:ECOD (20:10:01)
Ge6nd9G1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: C1-setF:ECOD (20:10:01)
Pe6nd9P1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: C1-setF:ECOD (20:10:01)
Me6nd9M1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: C1-setF:ECOD (20:10:01)
Je6nd9J1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: C1-setF:ECOD (20:10:01)
De6nd9D1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: C1-setF:ECOD (20:10:01)
Ae6nd9A1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT: zf-B_boxF:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
I3.40.50.410 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold von Willebrand factor, type A domainCATH (4.3.0)
L3.40.50.410 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold von Willebrand factor, type A domainCATH (4.3.0)
R3.40.50.410 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold von Willebrand factor, type A domainCATH (4.3.0)
O3.40.50.410 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold von Willebrand factor, type A domainCATH (4.3.0)
F3.40.50.410 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold von Willebrand factor, type A domainCATH (4.3.0)
C3.40.50.410 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold von Willebrand factor, type A domainCATH (4.3.0)
B3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
E3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
K3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
N3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
Q3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
H3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
G3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
P3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
M3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
J3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
D3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)
A3.10.100.10 Alpha Beta Roll Mannose-Binding Protein A Chain ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C, F, I, L, O
PF00092von Willebrand factor type A domain (VWA)von Willebrand factor type A domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C, F, I, L, O
Integrin alpha-2
B, E, H, K, N
Snaclec rhodocetin subunit delta -
A, D, G, J, M
Snaclec rhodocetin subunit gamma -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C, F, I, L, O
IPR013517FG-GAP repeatRepeat
C, F, I, L, O
IPR048286Integrin alpha, third immunoglobulin-like domainDomain
C, F, I, L, O
IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
C, F, I, L, O
IPR002035von Willebrand factor, type ADomain
C, F, I, L, O
IPR048285Integrin alpha, second immunoglobulin-like domainDomain
C, F, I, L, O
IPR032695Integrin domain superfamilyHomologous Superfamily
C, F, I, L, O
IPR013519Integrin alpha beta-propellorRepeat
C, F, I, L, O
IPR000413Integrin alpha chainFamily
C, F, I, L, O
IPR028994Integrin alpha, N-terminalHomologous Superfamily
C, F, I, L, O
IPR018184Integrin alpha chain, C-terminal cytoplasmic region, conserved siteConserved Site
B, E, H, K, N
IPR001304C-type lectin-likeDomain
B, E, H, K, N
IPR018378C-type lectin, conserved siteConserved Site
B, E, H, K, N
IPR016186C-type lectin-like/link domain superfamilyHomologous Superfamily
B, E, H, K, N
IPR050111C-type lectin and snaclec domain-containing proteinFamily
B, E, H, K, N
IPR016187C-type lectin foldHomologous Superfamily
A, D, G, J, M
IPR001304C-type lectin-likeDomain
A, D, G, J, M
IPR016186C-type lectin-like/link domain superfamilyHomologous Superfamily
A, D, G, J, M
IPR050111C-type lectin and snaclec domain-containing proteinFamily
A, D, G, J, M
IPR016187C-type lectin foldHomologous Superfamily