6NIG | pdb_00006nig

Crystal structure of the human TLR2-Diprovocim complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Glutaredoxin, ArsC	e6nigA1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Glutaredoxin, ArsC	ECOD (v294.1)
B	Glutaredoxin, ArsC	e6nigB1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Glutaredoxin, ArsC	ECOD (v294.1)
C	Glutaredoxin, ArsC	e6nigC1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Glutaredoxin, ArsC	ECOD (v294.1)
D	Glutaredoxin, ArsC	e6nigD1	A: a/b three-layered sandwiches	X: PriB N-terminal domain-like	H: Aconitase iron-sulfur domain	T: Aconitase iron-sulfur domain	F: Glutaredoxin, ArsC	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF13855	Leucine rich repeat (LRR_8)	Leucine rich repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Toll-like receptor 2,Variable lymphocyte receptor B	amyloid-beta binding binding peptide binding protein binding signaling receptor binding Toll-like receptor binding protein-containing complex binding identical protein binding molecular transducer activity transmembrane signaling receptor activity signaling receptor activity glycosaminoglycan binding carbohydrate derivative binding peptidoglycan binding amyloid-beta binding binding peptide binding protein binding signaling receptor binding Toll-like receptor binding protein-containing complex binding identical protein binding molecular transducer activity transmembrane signaling receptor activity signaling receptor activity glycosaminoglycan binding carbohydrate derivative binding peptidoglycan binding lipid binding lipopolysaccharide binding triacyl lipopeptide binding lipopeptide binding pattern recognition receptor activity lipopolysaccharide immune receptor activity	behavior multicellular organismal process system process learning learning or memory nervous system process cognition regulation of defense response regulation of biological process response to stimulus regulation of response to external stimulus defense response biological regulation positive regulation of biological process behavior multicellular organismal process system process learning learning or memory nervous system process cognition regulation of defense response regulation of biological process response to stimulus regulation of response to external stimulus defense response biological regulation positive regulation of biological process response to external stimulus regulation of inflammatory response positive regulation of response to stimulus positive regulation of response to external stimulus positive regulation of inflammatory response regulation of response to stimulus regulation of response to stress response to stress positive regulation of defense response inflammatory response regulation of biosynthetic process regulation of cellular process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process regulation of localization establishment of protein localization regulation of protein localization transport matrix metallopeptidase secretion positive regulation of matrix metallopeptidase secretion positive regulation of establishment of protein localization positive regulation of secretion by cell protein localization to extracellular region positive regulation of protein transport localization secretion by cell regulation of secretion by cell positive regulation of secretion intracellular protein localization regulation of matrix metallopeptidase secretion secretion regulation of transport establishment of protein localization to extracellular region regulation of establishment of protein localization export from cell regulation of protein transport protein secretion establishment of localization positive regulation of protein secretion regulation of protein secretion regulation of secretion positive regulation of transport protein transport macromolecule localization positive regulation of protein localization apoptotic process cell death programmed cell death biological process involved in interspecies interaction between organisms immune response response to other organism defense response to symbiont response to biotic stimulus immune system process defense response to other organism innate immune response response to external biotic stimulus positive regulation of interleukin-8 production cytokine production regulation of cytokine production regulation of multicellular organismal process interleukin-8 production positive regulation of multicellular organismal process positive regulation of cytokine production regulation of interleukin-8 production regulation of chemokine production chemokine production positive regulation of chemokine production cellular response to stimulus positive regulation of cell communication positive regulation of signal transduction signaling regulation of signal transduction cell communication positive regulation of Wnt signaling pathway signal transduction Wnt signaling pathway regulation of signaling cell surface receptor signaling pathway regulation of Wnt signaling pathway regulation of cell communication positive regulation of signaling cellular response to lipoteichoic acid response to oxygen-containing compound response to lipoteichoic acid cellular response to molecule of bacterial origin cellular response to oxygen-containing compound cellular response to biotic stimulus cellular response to chemical stimulus response to bacterium response to chemical response to molecule of bacterial origin defense response to virus response to virus positive regulation of DNA-templated transcription RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II primary metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription cellular response to bacterial lipoprotein response to bacterial lipoprotein response to bacterial lipopeptide cellular response to bacterial lipopeptide cellular response to triacyl bacterial lipopeptide response to triacyl bacterial lipopeptide positive regulation of canonical NF-kappaB signal transduction intracellular signal transduction regulation of intracellular signal transduction intracellular signaling cassette positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of canonical NF-kappaB signal transduction myeloid leukocyte differentiation cellular developmental process cell development mononuclear cell differentiation glial cell development multicellular organism development neurogenesis gliogenesis cell differentiation microglia differentiation anatomical structure development system development developmental process hemopoiesis macrophage differentiation nervous system development microglia development central nervous system development glial cell differentiation myeloid cell differentiation myeloid cell development leukocyte differentiation response to diacyl bacterial lipopeptide cellular response to diacyl bacterial lipopeptide interleukin-6 production positive regulation of interleukin-6 production regulation of interleukin-6 production regulation of cellular component organization regulation of developmental process negative regulation of biological process regulation of nervous system development cellular component organization cellular component biogenesis cellular component assembly negative regulation of cell junction assembly cell junction assembly negative regulation of cellular process negative regulation of nervous system development regulation of synapse structure or activity synapse organization cellular component organization or biogenesis regulation of biological quality regulation of synapse assembly regulation of multicellular organismal development negative regulation of cellular component organization negative regulation of developmental process negative regulation of synapse organization regulation of cellular component biogenesis regulation of cell junction assembly regulation of synapse organization cell junction organization negative regulation of multicellular organismal process synapse assembly negative regulation of synapse assembly detection of bacterial lipoprotein detection of external biotic stimulus detection of molecule of bacterial origin detection of biotic stimulus detection of bacterium detection of diacyl bacterial lipopeptide detection of stimulus detection of chemical stimulus detection of other organism detection of bacterial lipopeptide regulation of interleukin-12 production interleukin-12 production positive regulation of interleukin-12 production positive regulation of response to biotic stimulus immune response-regulating cell surface receptor signaling pathway pattern recognition receptor signaling pathway immune response-activating signaling pathway positive regulation of immune response regulation of immune system process positive regulation of immune system process cell surface toll-like receptor signaling pathway innate immune response-activating signaling pathway immune response-activating cell surface receptor signaling pathway regulation of innate immune response activation of innate immune response regulation of immune response activation of immune response regulation of response to biotic stimulus innate immune response activating cell surface receptor signaling pathway immune response-regulating signaling pathway toll-like receptor 2 signaling pathway cell surface pattern recognition receptor signaling pathway positive regulation of innate immune response detection of triacyl bacterial lipopeptide regulation of interferon-beta production interferon-beta production positive regulation of type I interferon production type I interferon production positive regulation of interferon-beta production regulation of type I interferon production response to type II interferon response to cytokine cellular response to type II interferon response to peptide cellular response to cytokine stimulus regulation of response to macrophage colony-stimulating factor response to macrophage colony-stimulating factor positive regulation of response to cytokine stimulus cellular response to macrophage colony-stimulating factor stimulus regulation of response to cytokine stimulus regulation of cellular response to macrophage colony-stimulating factor stimulus positive regulation of response to macrophage colony-stimulating factor positive regulation of cellular response to macrophage colony-stimulating factor stimulus toll-like receptor signaling pathway toll-like receptor TLR6:TLR2 signaling pathway import into cell negative regulation of transport negative regulation of endocytosis vesicle-mediated transport negative regulation of phagocytosis phagocytosis regulation of endocytosis regulation of phagocytosis regulation of vesicle-mediated transport endocytosis positive regulation of interleukin-18 production regulation of interleukin-18 production interleukin-18 production regulation of tumor necrosis factor production positive regulation of tumor necrosis factor superfamily cytokine production tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production tumor necrosis factor production regulation of tumor necrosis factor superfamily cytokine production defense response to Gram-positive bacterium defense response to bacterium	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex receptor complex membrane-bounded organelle membrane intracellular vesicle phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle phagocytic vesicle membrane cytoplasmic vesicle membrane cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex receptor complex membrane-bounded organelle membrane intracellular vesicle phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle phagocytic vesicle membrane cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane organelle endocytic vesicle membrane vesicle organelle membrane endocytic vesicle Golgi apparatus endomembrane system cell periphery plasma membrane protein complex Toll-like receptor 2-Toll-like receptor 6 protein complex plasma membrane plasma membrane signaling receptor complex membrane protein complex cell surface Toll-like receptor 1-Toll-like receptor 2 protein complex membrane microdomain membrane raft nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen secretory granule secretory vesicle secretory granule membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR001611	Leucine-rich repeat	Repeat
A, B, C, D	IPR017241	Toll-like receptor	Family
A, B, C, D	IPR035897	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Homologous Superfamily
A, B, C, D	IPR000483	Cysteine-rich flanking region, C-terminal	Domain
A, B, C, D	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	Domain
A, B, C, D	IPR003591	Leucine-rich repeat, typical subtype	Repeat
A, B, C, D	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A, B, C, D	IPR025875	Leucine rich repeat 4	Repeat
A, B, C, D	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A, B, C, D	IPR000372	Leucine-rich repeat N-terminal domain	Domain
A, B, C, D	IPR024592	Variable_lymphocyte_rcpt_C	Unknown
A, B, C, D	IPR001611	Leucine-rich repeat	Repeat
A, B, C, D	IPR003591	Leucine-rich repeat, typical subtype	Repeat

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: O60603	rheumatoid arthritis keratitis leprosy cardiomyopathy colorectal cancer cholestasis Inflammation mycobacterium tuberculosis, susceptibility to ovarian cancer pneumonia acute kidney failure staphylococcal infection hypereosinophilic syndrome subependymal giant cell astrocytoma arthritic joint disease rheumatoid arthritis keratitis leprosy cardiomyopathy colorectal cancer cholestasis Inflammation mycobacterium tuberculosis, susceptibility to ovarian cancer pneumonia acute kidney failure staphylococcal infection hypereosinophilic syndrome subependymal giant cell astrocytoma arthritic joint disease autoimmune disease interstitial cystitis breast cancer lung carcinoma congestive heart failure periodontitis psoriasis schizophrenia gastric carcinoma alcohol abuse IgA glomerulonephritis tuberculosis asthma inflammatory bowel disease bipolar disorder invasive ductal breast carcinoma brain injury cancer leprosy, susceptibility to, 3 colorectal carcinoma cutaneous lupus erythematosus pilocytic astrocytoma skin disease glioblastoma staphylococcus aureus infection allergic disease inborn carbohydrate metabolic disorder ulcerative colitis atherosclerosis ischemia reperfusion injury large cell medulloblastoma lung cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.