6OAZ | pdb_00006oaz

Apo Structure of WT Lipoprotein Lipase in Complex with GPIHBP1 Mutant N78D N82D produced in HEK293-F cells

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	UPAR_LY6_3	e6oazH1	A: few secondary structure elements	X: Snake toxin-like (From Topology)	H: Snake toxin-like (From Topology)	T: Snake toxin-like	F: UPAR_LY6_3	ECOD (1.6)
G	UPAR_LY6_3	e6oazG1	A: few secondary structure elements	X: Snake toxin-like (From Topology)	H: Snake toxin-like (From Topology)	T: Snake toxin-like	F: UPAR_LY6_3	ECOD (1.6)
F	UPAR_LY6_3	e6oazF1	A: few secondary structure elements	X: Snake toxin-like (From Topology)	H: Snake toxin-like (From Topology)	T: Snake toxin-like	F: UPAR_LY6_3	ECOD (1.6)
E	UPAR_LY6_3	e6oazE1	A: few secondary structure elements	X: Snake toxin-like (From Topology)	H: Snake toxin-like (From Topology)	T: Snake toxin-like	F: UPAR_LY6_3	ECOD (1.6)
D	PLAT	e6oazD2	A: beta sandwiches	X: jelly-roll	H: Lipase/lipooxygenase domain (PLAT/LH2 domain) (From Topology)	T: Lipase/lipooxygenase domain (PLAT/LH2 domain)	F: PLAT	ECOD (1.6)
D	Lipase	e6oazD1	A: a/b three-layered sandwiches	X: alpha/beta-Hydrolases (From Topology)	H: alpha/beta-Hydrolases (From Topology)	T: alpha/beta-Hydrolases	F: Lipase	ECOD (1.6)
C	PLAT	e6oazC1	A: beta sandwiches	X: jelly-roll	H: Lipase/lipooxygenase domain (PLAT/LH2 domain) (From Topology)	T: Lipase/lipooxygenase domain (PLAT/LH2 domain)	F: PLAT	ECOD (1.6)
C	Lipase	e6oazC2	A: a/b three-layered sandwiches	X: alpha/beta-Hydrolases (From Topology)	H: alpha/beta-Hydrolases (From Topology)	T: alpha/beta-Hydrolases	F: Lipase	ECOD (1.6)
B	PLAT	e6oazB1	A: beta sandwiches	X: jelly-roll	H: Lipase/lipooxygenase domain (PLAT/LH2 domain) (From Topology)	T: Lipase/lipooxygenase domain (PLAT/LH2 domain)	F: PLAT	ECOD (1.6)
B	Lipase	e6oazB2	A: a/b three-layered sandwiches	X: alpha/beta-Hydrolases (From Topology)	H: alpha/beta-Hydrolases (From Topology)	T: alpha/beta-Hydrolases	F: Lipase	ECOD (1.6)
A	PLAT	e6oazA2	A: beta sandwiches	X: jelly-roll	H: Lipase/lipooxygenase domain (PLAT/LH2 domain) (From Topology)	T: Lipase/lipooxygenase domain (PLAT/LH2 domain)	F: PLAT	ECOD (1.6)
A	Lipase	e6oazA1	A: a/b three-layered sandwiches	X: alpha/beta-Hydrolases (From Topology)	H: alpha/beta-Hydrolases (From Topology)	T: alpha/beta-Hydrolases	F: Lipase	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E, F, G, H	PF00087	Snake toxin and toxin-like protein (Toxin_TOLIP)	Snake toxin and toxin-like protein	This family predominantly includes venomous neurotoxins and cytotoxins from snakes, but also structurally similar (non-snake) toxin-like proteins (TOLIPs) such as Lymphocyte antigen 6D and Ly6/PLAUR domain-containing protein. Snake toxins are short ...	This family predominantly includes venomous neurotoxins and cytotoxins from snakes, but also structurally similar (non-snake) toxin-like proteins (TOLIPs) such as Lymphocyte antigen 6D and Ly6/PLAUR domain-containing protein. Snake toxins are short proteins with a compact, disulphide-rich structure. TOLIPs have similar structural features (abundance of spaced cysteine residues, a high frequency of charge residues, a signal peptide for secretion and a compact structure) but, are not associated with a venom gland or poisonous function. They are endogenous animal proteins that are not restricted to poisonous animals [1].	Domain
A, B, C, D	PF01477	PLAT/LH2 domain (PLAT)	PLAT/LH2 domain	This domain is found in a variety of membrane or lipid associated proteins. It is called the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain. The known structure of pancreatic lipase shows this domain bind ...	This domain is found in a variety of membrane or lipid associated proteins. It is called the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain. The known structure of pancreatic lipase shows this domain binds to procolipase Pfam:PF01114, which mediates membrane association. So it appears possible that this domain mediates membrane attachment via other protein binding partners. The structure of this domain is known for many members of the family and is composed of a beta sandwich.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E, F, G, H	Glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1	enzyme regulator activity enzyme activator activity molecular function activator activity lipoprotein lipase activator activity molecular function regulator activity lipase activator activity lipoprotein particle binding protein-containing complex binding binding chylomicron binding protein-lipid complex binding protein binding enzyme binding lipase binding enzyme regulator activity enzyme activator activity molecular function activator activity lipoprotein lipase activator activity molecular function regulator activity lipase activator activity lipoprotein particle binding protein-containing complex binding binding chylomicron binding protein-lipid complex binding protein binding enzyme binding lipase binding lipid binding protein transporter activity transporter activity	regulation of protein stability biological regulation regulation of biological quality protein stabilization response to heparin response to stimulus response to chemical response to oxygen-containing compound response to nitrogen compound multicellular organismal process positive regulation of cellular component organization regulation of cellular process regulation of cellular component organization protein-containing complex remodeling regulation of protein stability biological regulation regulation of biological quality protein stabilization response to heparin response to stimulus response to chemical response to oxygen-containing compound response to nitrogen compound multicellular organismal process positive regulation of cellular component organization regulation of cellular process regulation of cellular component organization protein-containing complex remodeling protein-lipid complex organization positive regulation of biological process cellular component organization regulation of chylomicron remodeling protein-lipid complex remodeling regulation of multicellular organismal process cellular component organization or biogenesis positive regulation of cellular process positive regulation of chylomicron remodeling plasma lipoprotein particle organization regulation of biological process protein-containing complex organization plasma lipoprotein particle remodeling regulation of plasma lipoprotein particle levels chylomicron remodeling triglyceride-rich lipoprotein particle remodeling positive regulation of multicellular organismal process cellular process localization protein localization to cell surface macromolecule localization intracellular protein localization chemical homeostasis homeostatic process triglyceride homeostasis acylglycerol homeostasis lipid homeostasis oxoacid metabolic process ketone metabolic process regulation of lipid metabolic process lipid biosynthetic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process regulation of primary metabolic process positive regulation of fatty acid biosynthetic process positive regulation of metabolic process regulation of small molecule metabolic process positive regulation of biosynthetic process positive regulation of lipid metabolic process small molecule metabolic process positive regulation of fatty acid metabolic process regulation of biosynthetic process fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process carboxylic acid metabolic process primary metabolic process fatty acid biosynthetic process regulation of ketone metabolic process biosynthetic process positive regulation of lipid biosynthetic process regulation of fatty acid metabolic process regulation of fatty acid biosynthetic process metabolic process monocarboxylic acid metabolic process regulation of lipid biosynthetic process positive regulation of small molecule metabolic process regulation of metabolic process lipid metabolic process sterol homeostasis cholesterol homeostasis cellular localization establishment of protein localization nitrogen compound transport transport intracellular transport establishment of localization protein transport establishment of localization in cell intracellular protein transport protein import regulation of chylomicron remnant clearance chylomicron remnant clearance positive regulation of chylomicron remnant clearance positive regulation of lipoprotein particle clearance plasma lipoprotein particle clearance regulation of lipoprotein particle clearance triglyceride-rich lipoprotein particle clearance neutral lipid metabolic process lipid catabolic process catabolic process neutral lipid catabolic process glycerolipid catabolic process acylglycerol catabolic process triglyceride catabolic process triglyceride metabolic process glycerolipid metabolic process acylglycerol metabolic process transcytosis vesicle-mediated transport	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane apical part of cell plasma membrane region apical plasma membrane basal part of cell basal plasma membrane basolateral plasma membrane protein-containing complex cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane apical part of cell plasma membrane region apical plasma membrane basal part of cell basal plasma membrane basolateral plasma membrane protein-containing complex catalytic complex extracellular region
A, B, C, D	Lipoprotein lipase	triacylglycerol lipase activity hydrolase activity, acting on ester bonds carboxylic ester hydrolase activity hydrolase activity catalytic activity lipase activity protein binding binding heparan sulfate proteoglycan binding proteoglycan binding carbohydrate derivative binding cation binding ion binding calcium ion binding triacylglycerol lipase activity hydrolase activity, acting on ester bonds carboxylic ester hydrolase activity hydrolase activity catalytic activity lipase activity protein binding binding heparan sulfate proteoglycan binding proteoglycan binding carbohydrate derivative binding cation binding ion binding calcium ion binding metal ion binding small molecule binding lipoprotein lipase activity signaling receptor binding phospholipase activity apolipoprotein binding lipoprotein particle binding protein-containing complex binding protein-lipid complex binding protein-membrane adaptor activity protein-macromolecule adaptor activity molecular adaptor activity identical protein binding protein homodimerization activity protein dimerization activity phospholipase A1 activity heparin binding glycosaminoglycan binding sulfur compound binding	cellular response to stimulus cellular response to nutrient levels response to nutrient levels cellular response to chemical stimulus response to stimulus response to chemical response to nutrient cellular response to nutrient cellular process regulation of defense response regulation of biological process regulation of response to external stimulus defense response biological regulation cellular response to stimulus cellular response to nutrient levels response to nutrient levels cellular response to chemical stimulus response to stimulus response to chemical response to nutrient cellular response to nutrient cellular process regulation of defense response regulation of biological process regulation of response to external stimulus defense response biological regulation positive regulation of biological process response to external stimulus regulation of inflammatory response positive regulation of response to stimulus positive regulation of response to external stimulus positive regulation of inflammatory response regulation of response to stimulus regulation of response to stress response to stress positive regulation of defense response inflammatory response chemical homeostasis homeostatic process triglyceride homeostasis acylglycerol homeostasis lipid homeostasis plasma lipoprotein particle organization multicellular organismal process protein-containing complex organization protein-containing complex remodeling protein-lipid complex organization plasma lipoprotein particle remodeling regulation of plasma lipoprotein particle levels cellular component organization triglyceride-rich lipoprotein particle remodeling very-low-density lipoprotein particle remodeling protein-lipid complex remodeling cellular component organization or biogenesis regulation of cellular process interleukin-1 production regulation of interleukin-1 beta production positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of interleukin-1 beta production positive regulation of biosynthetic process regulation of cytokine production cytokine production regulation of multicellular organismal process positive regulation of interleukin-1 production positive regulation of macromolecule metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of interleukin-1 production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process interleukin-1 beta production positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process chemokine (C-X-C motif) ligand 2 production regulation of chemokine (C-X-C motif) ligand 2 production positive regulation of chemokine (C-X-C motif) ligand 2 production regulation of chemokine production chemokine production positive regulation of chemokine production developmental process fat cell differentiation positive regulation of fat cell differentiation regulation of developmental process cellular developmental process regulation of cell differentiation positive regulation of developmental process positive regulation of cell differentiation cell differentiation regulation of fat cell differentiation diterpenoid metabolic process retinoid metabolic process primary metabolic process terpenoid metabolic process isoprenoid metabolic process lipid metabolic process chylomicron remodeling phospholipid metabolic process organophosphate metabolic process phosphate-containing compound metabolic process phosphorus metabolic process very-low-density lipoprotein particle clearance plasma lipoprotein particle clearance lipoprotein particle mediated signaling signaling response to endogenous stimulus response to lipoprotein particle response to nitrogen compound cell communication cellular response to low-density lipoprotein particle stimulus low-density lipoprotein particle mediated signaling signal transduction cellular response to lipoprotein particle stimulus connective tissue development adipose tissue development positive regulation of adipose tissue development animal organ development tissue development regulation of adipose tissue development anatomical structure development interleukin-6 production positive regulation of interleukin-6 production regulation of interleukin-6 production regulation of localization lipid storage lipid localization positive regulation of lipid localization localization regulation of lipid storage regulation of lipid localization macromolecule localization nutrient storage positive regulation of lipid storage sterol homeostasis cholesterol homeostasis response to hexose response to monosaccharide response to carbohydrate response to glucose response to oxygen-containing compound macrophage derived foam cell differentiation foam cell differentiation regulation of macrophage derived foam cell differentiation positive regulation of macrophage derived foam cell differentiation fatty acid metabolic process oxoacid metabolic process carboxylic acid metabolic process small molecule metabolic process monocarboxylic acid metabolic process organic acid metabolic process cholesterol storage positive regulation of cholesterol storage regulation of cholesterol storage monocarboxylic acid biosynthetic process small molecule biosynthetic process lipid biosynthetic process organic acid biosynthetic process fatty acid biosynthetic process carboxylic acid biosynthetic process neutral lipid metabolic process lipid catabolic process catabolic process neutral lipid catabolic process glycerolipid catabolic process acylglycerol catabolic process triglyceride catabolic process triglyceride metabolic process glycerolipid metabolic process acylglycerol metabolic process biological process involved in interspecies interaction between organisms response to other organism response to bacterium response to external biotic stimulus response to biotic stimulus high-density lipoprotein particle remodeling response to lipid response to fatty acid cellular response to oxygen-containing compound cellular response to fatty acid cellular response to lipid regulation of tumor necrosis factor production positive regulation of tumor necrosis factor superfamily cytokine production tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production tumor necrosis factor production regulation of tumor necrosis factor superfamily cytokine production	cellular anatomical structure extracellular region extracellular space cell surface cell periphery plasma membrane membrane protein-containing complex catalytic complex plasma lipoprotein particle lipoprotein particle chylomicron protein-lipid complex very-low-density lipoprotein particle cellular anatomical structure extracellular region extracellular space cell surface cell periphery plasma membrane membrane protein-containing complex catalytic complex plasma lipoprotein particle lipoprotein particle chylomicron protein-lipid complex very-low-density lipoprotein particle triglyceride-rich plasma lipoprotein particle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E, F, G, H	IPR035076	Snake toxin/toxin-like	Domain
E, F, G, H	IPR045860	Snake toxin-like superfamily	Homologous Superfamily
E, F, G, H	IPR051110	Ly-6/neurotoxin-like and GPI-anchored	Family
A, B, C, D	IPR033906	Lipase, N-terminal	Domain
A, B, C, D	IPR013818	Lipase	Domain
A, B, C, D	IPR016272	Lipase, LIPH-type	Family
A, B, C, D	IPR000734	Triacylglycerol lipase family	Family
A, B, C, D	IPR001024	PLAT/LH2 domain	Domain
A, B, C, D	IPR002330	Lipoprotein lipase	Family
A, B, C, D	IPR036392	PLAT/LH2 domain superfamily	Homologous Superfamily
A, B, C, D	IPR029058	Alpha/Beta hydrolase fold	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
E, F, G, H	Pharos: Q8IV16	hyperlipoproteinemia, type 1D atypical teratoid rhabdoid tumor breast fibroadenoma Hypercholesterolemia, Familial invasive ductal breast carcinoma non-small cell lung carcinoma subependymal giant cell astrocytoma breast cancer hyperlipoproteinemia type V lung adenocarcinoma osteosarcoma breast carcinoma ductal breast carcinoma in situ malignant glioma psoriasis
A, B, C, D	Pharos: P06858	familial lipoprotein lipase deficiency obesity disorder pancreatitis hyperlipoproteinemia type V familial hyperlipidemia cardiomyopathy hepatitis C virus infection familial hypercholesterolemia Necrosis malignant colon neoplasm hypertensive disorder carcinoma metabolic syndrome X hypertriglyceridemia prostate cancer familial lipoprotein lipase deficiency obesity disorder pancreatitis hyperlipoproteinemia type V familial hyperlipidemia cardiomyopathy hepatitis C virus infection familial hypercholesterolemia Necrosis malignant colon neoplasm hypertensive disorder carcinoma metabolic syndrome X hypertriglyceridemia prostate cancer sarcomatoid carcinoma cardiovascular disease lung carcinoma malignant mesothelioma mammary neoplasms, animal glioblastoma hyperlipidemia atherosclerosis pancreatic intraductal papillary-mucinous neoplasm benign colon neoplasm pilocytic astrocytoma breast fibroadenoma inborn carbohydrate metabolic disorder invasive ductal breast carcinoma schizophrenia chronic kidney disease lung adenocarcinoma ulcerative colitis cutaneous lupus erythematosus ductal breast carcinoma in situ MALT lymphoma familial apolipoprotein C-II deficiency myocardial infarction heart disease non-alcoholic fatty liver disease hypercholesterolemia, autosomal dominant, type B oligodendroglioma atopic eczema breast cancer primitive neuroectodermal tumor inborn errors of metabolism psoriasis tuberculosis colonic neoplasm lung cancer undifferentiated carcinoma dermatomyositis malignant glioma nasopharyngeal carcinoma non-small cell lung carcinoma astrocytic tumor hyperlipidemia, familial combined, LPL related osteosarcoma B-cell chronic lymphocytic leukemia peripheral arterial disease breast carcinoma inherited lipid metabolism disorder type 2 diabetes mellitus Crohn disease

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D, E A, B, C, D, E, F, G, H	OPM	Monotopic/peripheral	Alpha/Beta monotopic/peripheral	Alpha/beta-hydrolases	Pancreatic lipase-related

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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