6OQQ | pdb_00006oqq

Legionella pneumophila SidJ/Saccharomyces cerevisiae calmodulin complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d6oqqd_	All alpha proteins	EF Hand-like	EF-hand	Calmodulin-like	Calmodulin	Baker's yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ],	SCOPe (2.08)
B	d6oqqb_	All alpha proteins	EF Hand-like	EF-hand	Calmodulin-like	Calmodulin	Baker's yeast (Saccharomyces cerevisiae S288C ) [TaxId: 559292 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	EF-hand	8032516	3001983	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	EF-hand	8032516	3001983	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	UNK_F_TYPE	e6oqqC3	A: alpha superhelices	X: C-terminal domain of SidJ (From Topology)	H: C-terminal domain of SidJ (From Topology)	T: C-terminal domain of SidJ	F: UNK_F_TYPE	ECOD (1.6)
C	UNK_F_TYPE	e6oqqC1	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: UNK_F_TYPE	ECOD (1.6)
C	UNK_F_TYPE	e6oqqC2	A: a+b complex topology	X: N-terminal domain of SidJ (From Topology)	H: N-terminal domain of SidJ (From Topology)	T: N-terminal domain of SidJ	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e6oqqA3	A: alpha superhelices	X: C-terminal domain of SidJ (From Topology)	H: C-terminal domain of SidJ (From Topology)	T: C-terminal domain of SidJ	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e6oqqA2	A: a+b complex topology	X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology)	H: Protein kinase/SAICAR synthase/ATP-grasp	T: Protein kinase	F: UNK_F_TYPE	ECOD (1.6)
A	UNK_F_TYPE	e6oqqA1	A: a+b complex topology	X: N-terminal domain of SidJ (From Topology)	H: N-terminal domain of SidJ (From Topology)	T: N-terminal domain of SidJ	F: UNK_F_TYPE	ECOD (1.6)
D	EF-hand_7_8	e6oqqD2	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: EF-hand_7_8	ECOD (1.6)
D	EF-hand_7_5	e6oqqD1	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: EF-hand_7_5	ECOD (1.6)
B	EF-hand_7_8	e6oqqB2	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: EF-hand_7_8	ECOD (1.6)
B	EF-hand_7_5	e6oqqB1	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: EF-hand_7_5	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C	PF26375	SidJ calmodulin-dependent glutamylase N-terminal domain (SidJ_CaM_N)	SidJ calmodulin-dependent glutamylase N-terminal domain	This entry represents the N-terminal domain of SidJ family proteins. The SidJ_CaM family comprises proteins that function as calmodulin-dependent glutamylases. These proteins facilitate the attachment of glutamate moieties to specific catalytic resid ...	This entry represents the N-terminal domain of SidJ family proteins. The SidJ_CaM family comprises proteins that function as calmodulin-dependent glutamylases. These proteins facilitate the attachment of glutamate moieties to specific catalytic residues on target proteins such as SdeA, SdeB, SdeC, and SidE. This modification is essential for the mono-ADP-ribosyltransferase activity of SdeA and inhibits its ubiquitinating activity. The glutamylase activity of this family is dependent on the presence of host calmodulin, highlighting its role in host-pathogen interactions. Additionally, members of this family may possess deubiquitinase activity, potentially reversing substrate ubiquitination mediated by SdeA by cleaving the phosphodiester bond linking phosphoribosylated ubiquitin to protein substrates.	Domain
B, D	PF13499	EF-hand domain pair (EF-hand_7)	EF-hand domain pair		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C	Legionella pneumophila SidJ	acid-amino acid ligase activity protein-glutamic acid ligase activity, initiating catalytic activity, acting on a protein protein-glutamic acid ligase activity catalytic activity ligase activity, forming carbon-nitrogen bonds ligase activity cysteine-type peptidase activity peptidase activity hydrolase activity protein-glutamic acid ligase activity, elongating binding nucleoside phosphate binding nucleotide binding acid-amino acid ligase activity protein-glutamic acid ligase activity, initiating catalytic activity, acting on a protein protein-glutamic acid ligase activity catalytic activity ligase activity, forming carbon-nitrogen bonds ligase activity cysteine-type peptidase activity peptidase activity hydrolase activity protein-glutamic acid ligase activity, elongating binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding cation binding ion binding metal ion binding transferase activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	-
B, D	Calmodulin	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding enzyme regulator activity molecular function regulator activity calcium-dependent protein binding protein binding kinase binding enzyme binding protein kinase binding mitogen-activated protein kinase binding	positive regulation of organelle organization regulation of Arp2/3 complex-mediated actin nucleation regulation of cytoskeleton organization regulation of cellular component organization regulation of cellular process regulation of actin filament-based process positive regulation of cellular component organization positive regulation of Arp2/3 complex-mediated actin nucleation positive regulation of biological process cellular component organization regulation of actin nucleation actin filament-based process cellular component organization or biogenesis positive regulation of cellular process positive regulation of organelle organization regulation of Arp2/3 complex-mediated actin nucleation regulation of cytoskeleton organization regulation of cellular component organization regulation of cellular process regulation of actin filament-based process positive regulation of cellular component organization positive regulation of Arp2/3 complex-mediated actin nucleation positive regulation of biological process cellular component organization regulation of actin nucleation actin filament-based process cellular component organization or biogenesis positive regulation of cellular process regulation of biological process regulation of actin filament organization actin cytoskeleton organization positive regulation of cytoskeleton organization actin filament organization biological regulation Arp2/3 complex-mediated actin nucleation positive regulation of supramolecular fiber organization regulation of organelle organization organelle organization positive regulation of actin nucleation regulation of actin cytoskeleton organization regulation of supramolecular fiber organization cellular process actin nucleation supramolecular fiber organization cytoskeleton organization localization import into cell transport endocytosis establishment of localization vesicle-mediated transport sexual reproduction reproductive process conjugation with cellular fusion organelle fusion nucleus organization karyogamy karyogamy involved in conjugation with cellular fusion establishment of protein localization cellular localization nitrogen compound transport nucleocytoplasmic transport nuclear transport intracellular transport protein localization to nucleus import into nucleus establishment of protein localization to organelle protein transport establishment of localization in cell macromolecule localization protein localization to organelle protein import into nucleus intracellular protein localization intracellular protein transport vacuole fusion vacuole organization vacuole fusion, non-autophagic phosphatidylinositol metabolic process glycerophospholipid biosynthetic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phospholipid biosynthetic process phosphatidylinositol biosynthetic process phospholipid metabolic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process metabolic process glycerolipid metabolic process phosphorus metabolic process lipid metabolic process cellular response to stimulus response to osmotic stress response to stimulus cellular response to chemical stress cellular response to osmotic stress cellular response to environmental stimulus cellular response to chemical stimulus hyperosmotic response cellular hyperosmotic response cellular response to stress response to stress response to chemical response to abiotic stimulus cellular response to abiotic stimulus microtubule cytoskeleton organization microtubule-based process plasma membrane tubulation membrane organization regulation of plasma membrane organization plasma membrane organization regulation of membrane tubulation endomembrane system organization catabolic process autophagy microautophagy process utilizing autophagic mechanism microtubule organizing center organization spindle pole body organization cell cycle cell cycle process vesicle transport along actin filament vesicle cytoskeletal trafficking vesicle localization establishment of organelle localization establishment of vesicle localization actin filament-based movement organelle localization cytoskeleton-dependent intracellular transport actin filament-based transport reproductive process in single-celled organism cell division cell budding asexual reproduction regulation of microtubule polymerization or depolymerization cellular component biogenesis regulation of protein-containing complex assembly microtubule polymerization or depolymerization cellular component assembly protein-containing complex assembly protein polymerization protein-containing complex organization regulation of microtubule-based process microtubule polymerization regulation of cellular component biogenesis regulation of microtubule nucleation microtubule nucleation regulation of microtubule polymerization regulation of protein polymerization regulation of microtubule cytoskeleton organization receptor-mediated endocytosis	cellular anatomical structure cell tip cell pole cell cortex intracellular anatomical structure cortical cytoskeleton intracellular membraneless organelle actin cytoskeleton cell periphery intracellular organelle endocytic patch cytoskeleton organelle membraneless organelle cellular anatomical structure cell tip cell pole cell cortex intracellular anatomical structure cortical cytoskeleton intracellular membraneless organelle actin cytoskeleton cell periphery intracellular organelle endocytic patch cytoskeleton organelle membraneless organelle cortical actin cytoskeleton actin cortical patch cytoplasm incipient cellular bud site site of polarized growth cellular bud cellular bud tip cell projection mating projection mating projection tip plasma membrane bounded cell projection protein-containing complex myosin complex myosin V complex unconventional myosin complex microtubule organizing center central plaque of spindle pole body spindle pole body microtubule cytoskeleton cellular bud neck myosin I complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D	IPR002048	EF-hand domain	Domain
B, D	IPR011992	EF-hand domain pair	Homologous Superfamily
B, D	IPR050230	Calmodulin/Myosin light chain/Troponin C-like	Family
B, D	IPR018247	EF-Hand 1, calcium-binding site	Binding Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.