6OTF
Symmetric reconstruction of human norovirus GII.2 Snow Mountain Virus Strain VLP in T=3 symmetry
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d6otfb_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | automated matches | automated matches | (Snow Mountain virus ) [TaxId: 52276 ], | SCOPe (2.08) |
B [auth A] | d6otfa_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | automated matches | automated matches | (Snow Mountain virus ) [TaxId: 52276 ], | SCOPe (2.08) |
C | d6otfc_ | All beta proteins | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | automated matches | automated matches | (Snow Mountain virus ) [TaxId: 52276 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | Calici_coat_C_N | e6otfB1 | A: beta barrels | X: cradle loop barrel | H: Capsid protein protrusion (P) domain (From Topology) | T: Capsid protein protrusion (P) domain | F: Calici_coat_C_N | ECOD (1.6) |
A [auth B] | Calici_coat_C_C | e6otfB2 | A: beta barrels | X: cradle loop barrel | H: Capsid protein protrusion (P) domain (From Topology) | T: Capsid protein protrusion (P) domain | F: Calici_coat_C_C | ECOD (1.6) |
A [auth B] | Rhv_4 | e6otfB3 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Rhv_4 | ECOD (1.6) |
B [auth A] | Calici_coat_C_N | e6otfA2 | A: beta barrels | X: cradle loop barrel | H: Capsid protein protrusion (P) domain (From Topology) | T: Capsid protein protrusion (P) domain | F: Calici_coat_C_N | ECOD (1.6) |
B [auth A] | Calici_coat_C_C | e6otfA1 | A: beta barrels | X: cradle loop barrel | H: Capsid protein protrusion (P) domain (From Topology) | T: Capsid protein protrusion (P) domain | F: Calici_coat_C_C | ECOD (1.6) |
B [auth A] | Rhv_4 | e6otfA3 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Rhv_4 | ECOD (1.6) |
C | Calici_coat_C_N | e6otfC1 | A: beta barrels | X: cradle loop barrel | H: Capsid protein protrusion (P) domain (From Topology) | T: Capsid protein protrusion (P) domain | F: Calici_coat_C_N | ECOD (1.6) |
C | Calici_coat_C_C | e6otfC2 | A: beta barrels | X: cradle loop barrel | H: Capsid protein protrusion (P) domain (From Topology) | T: Capsid protein protrusion (P) domain | F: Calici_coat_C_C | ECOD (1.6) |
C | Rhv_4 | e6otfC3 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Rhv_4 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
A [auth B] | 2.40.510.10 | Mainly Beta | Beta Barrel | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | CATH (utative) |
A [auth B] | 2.40.30.120 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (utative) |
B [auth A] | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
B [auth A] | 2.40.510.10 | Mainly Beta | Beta Barrel | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | CATH (utative) |
B [auth A] | 2.40.30.120 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (utative) |
C | 2.60.120.20 | Mainly Beta | Sandwich | Jelly Rolls | CATH (utative) | |
C | 2.40.510.10 | Mainly Beta | Beta Barrel | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | CATH (utative) |
C | 2.40.30.120 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A], C | PF08435 | Calicivirus coat protein C-terminal (Calici_coat_C) | Calicivirus coat protein C-terminal | - | Family |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth A], C | IPR029053 | Viral coat protein subunit | Homologous Superfamily |
A [auth B], B [auth A], C | IPR004005 | Calicivirus coat protein | Domain |
A [auth B], B [auth A], C | IPR013643 | Calicivirus coat protein C-terminal | Domain |
A [auth B], B [auth A], C | IPR033703 | Picornavirus/Calicivirus coat protein | Domain |