6Q6H
Cryo-EM structure of the APC/C-Cdc20-Cdk2-cyclinA2-Cks2 complex, the D2 box class
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth L] | SCOP2B Superfamily | galactose-binding domain-like | 8037020 | 3000087 | SCOP2B (2022-06-29) |
K [auth M] | SCOP2B Superfamily | Anaphase-promoting complex subunit 13 | 8093172 | 3002688 | SCOP2B (2022-06-29) |
L [auth H] | SCOP2B Superfamily | Anaphase-promoting complex subunit 16-like | 8053719 | 3002218 | SCOP2B (2022-06-29) |
Q [auth U] | SCOP2B Superfamily | TPR-like | 8057064 | 3001345 | SCOP2B (2022-06-29) |
R [auth V] | SCOP2B Superfamily | TPR-like | 8057064 | 3001345 | SCOP2B (2022-06-29) |
T [auth R] | SCOP2B Superfamily | WD40 repeat-like | 8106388 | 3001694 | SCOP2B (2022-06-29) |
E [auth I] | SCOP2B Superfamily | WD40 repeat-like | 8106386 | 3001694 | SCOP2B (2022-06-29) |
E [auth I] | SCOP2B Superfamily | WD40 repeat-like | 8106386 | 3001694 | SCOP2B (2022-06-29) |
H [auth C] | SCOP2B Superfamily | RING/U-box like | 8082719 | 3000160 | SCOP2B (2022-06-29) |
I [auth G] | SCOP2B Superfamily | CDC26-like | 8053843 | 3002235 | SCOP2B (2022-06-29) |
J [auth W] | SCOP2B Superfamily | CDC26-like | 8053843 | 3002235 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth L] | ANAPC10 | e6q6hL1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: ANAPC10 | ECOD (1.6) |
M [auth J] | TPR_11_7 | e6q6hJ1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TPR_11_7 | ECOD (1.6) |
N [auth P] | TPR_11_7 | e6q6hP1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TPR_11_7 | ECOD (1.6) |
P [auth Y] | TPR_19,ANAPC8 | e6q6hY1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TPR_19,ANAPC8 | ECOD (1.6) |
S [auth Z] | TPR_19,ANAPC8 | e6q6hZ1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TPR_19,ANAPC8 | ECOD (1.6) |
Q [auth U] | KOG1155 | e6q6hU3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG1155 | ECOD (1.6) |
Q [auth U] | ANAPC8 | e6q6hU2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: ANAPC8 | ECOD (1.6) |
R [auth V] | KOG1155 | e6q6hV3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG1155 | ECOD (1.6) |
R [auth V] | ANAPC8 | e6q6hV2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: ANAPC8 | ECOD (1.6) |
C [auth A] | KOG1858_3rd | e6q6hA5 | A: beta sandwiches | X: 26S proteasome subunit Rpn2 C-terminal domain (From Topology) | H: 26S proteasome subunit Rpn2 C-terminal domain (From Topology) | T: 26S proteasome subunit Rpn2 C-terminal domain | F: KOG1858_3rd | ECOD (1.6) |
C [auth A] | ANAPC1 | e6q6hA2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC1 | ECOD (1.6) |
C [auth A] | KOG1858_2nd | e6q6hA3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Proteasome/cyclosome (PC) repeat (From Topology) | T: Proteasome/cyclosome (PC) repeat | F: KOG1858_2nd | ECOD (1.6) |
C [auth A] | KOG1858_1st | e6q6hA4 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Anaphase-promoting complex subunit 1 first helical domain (From Topology) | T: Anaphase-promoting complex subunit 1 first helical domain | F: KOG1858_1st | ECOD (1.6) |
C [auth A] | KOG1858_4th | e6q6hA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Anaphase-promoting complex subunit 1 second helical domain (From Topology) | T: Anaphase-promoting complex subunit 1 second helical domain | F: KOG1858_4th | ECOD (1.6) |
D [auth N] | Cullin_4th | e6q6hN2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Cullin_4th | ECOD (1.6) |
D [auth N] | Cullin_2nd | e6q6hN1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Cullin_2nd | ECOD (1.6) |
D [auth N] | KOG2165 | e6q6hN4 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG2165 | ECOD (1.6) |
D [auth N] | Cullin_3rd | e6q6hN3 | A: a+b duplicates or obligate multimers | X: a+b domain in cullin-like proteins (From Topology) | H: a+b domain in cullin-like proteins (From Topology) | T: a+b domain in cullin-like proteins | F: Cullin_3rd | ECOD (1.6) |
E [auth I] | ANAPC4_WD40 | e6q6hI1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40 | ECOD (1.6) |
E [auth I] | ANAPC4 | e6q6hI2 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Helical bundle domain in anaphase-promoting complex subunit 4 (From Topology) | T: Helical bundle domain in anaphase-promoting complex subunit 4 | F: ANAPC4 | ECOD (1.6) |
F [auth O] | Apc5_N | e6q6hO1 | A: alpha arrays | X: SHQ1 C-terminal domain-like | H: Anaphase-promoting complex subunit 5 N-terminal domain (From Topology) | T: Anaphase-promoting complex subunit 5 N-terminal domain | F: Apc5_N | ECOD (1.6) |
F [auth O] | ANAPC5 | e6q6hO2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: ANAPC5 | ECOD (1.6) |
O [auth Q] | TPR_11_7 | e6q6hQ1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TPR_11_7 | ECOD (1.6) |
H [auth C] | zf-rbx1 | e6q6hC1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-rbx1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth L] | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (utative) |
Q [auth U] | 1.25.40.10 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Tetratricopeptide repeat domain | CATH (utative) |
R [auth V] | 1.25.40.10 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Tetratricopeptide repeat domain | CATH (utative) |
O [auth Q] | 1.25.40.10 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Tetratricopeptide repeat domain | CATH (utative) |
H [auth C] | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth L] | PF03256 | Anaphase-promoting complex, subunit 10 (APC10) (ANAPC10) | Anaphase-promoting complex, subunit 10 (APC10) | - | Family |
K [auth M] | PF05839 | Apc13p protein (Apc13p) | Apc13p protein | - | Family |
M [auth J], N [auth P] | PF12895 | Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) | Anaphase-promoting complex, cyclosome, subunit 3 | - | Repeat |
M [auth J], N [auth P] | PF00515 | Tetratricopeptide repeat (TPR_1) | Tetratricopeptide repeat | - | Repeat |
P [auth Y], S [auth Z] | PF13181 | Tetratricopeptide repeat (TPR_8) | Tetratricopeptide repeat | - | Repeat |
P [auth Y], S [auth Z] | PF13432 | Tetratricopeptide repeat (TPR_16) | Tetratricopeptide repeat | - | Repeat |
Q [auth U], R [auth V] | PF04049 | Anaphase promoting complex subunit 8 / Cdc23 (ANAPC8) | Anaphase promoting complex subunit 8 / Cdc23 | - | Repeat |
T [auth R] | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain (ANAPC4_WD40) | Anaphase-promoting complex subunit 4 WD40 domain | - | Repeat |
T [auth R] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
U [auth S] | PF16500 | Cyclin-A N-terminal APC/C binding region (Cyclin_N2) | Cyclin-A N-terminal APC/C binding region | - | Disordered |
B [auth D] | PF15243 | Anaphase-promoting complex subunit 15 (ANAPC15) | Anaphase-promoting complex subunit 15 | - | Family |
C [auth A] | PF20518 | Anaphase-promoting complex subunit 1 middle domain (Apc1_MidN) | Anaphase-promoting complex subunit 1 middle domain | - | Repeat |
C [auth A] | PF18122 | Anaphase-promoting complex sub unit 1 C-terminal domain (APC1_C) | Anaphase-promoting complex sub unit 1 C-terminal domain | This is the C-terminal domain of chain A, also known as sub-unit 1, found in anaphase-promoting complex (APC/C) present in Homo sapiens. APC/C is an ubiquitin ligase that controls chromosome segregation and mitotic exit [1]. | Domain |
C [auth A] | PF21282 | APC1 beta sandwich domain (APC1_3rd) | APC1 beta sandwich domain | This domain is found close to the C-terminus of the APC1 protein which is a component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the ce ... | Domain |
D [auth N] | PF00888 | Cullin family (Cullin) | Cullin family | - | Repeat |
E [auth I] | PF12896 | Anaphase-promoting complex, cyclosome, subunit 4 (ANAPC4) | Anaphase-promoting complex, cyclosome, subunit 4 | Apc4 is one of the larger of the subunits of the anaphase-promoting complex or cyclosome. This family represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits. The anaphase-promoting complex is a multiprotein s ... | Domain |
E [auth I] | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain (ANAPC4_WD40) | Anaphase-promoting complex subunit 4 WD40 domain | - | Repeat |
F [auth O] | PF12862 | Anaphase-promoting complex subunit 5 (ANAPC5) | Anaphase-promoting complex subunit 5 | - | Repeat |
F [auth O] | PF21371 | Anaphase-promoting complex subunit 5, N-terminal domain (Apc5_N) | Anaphase-promoting complex subunit 5, N-terminal domain | This domain is found at the N-terminal end of Anaphase-promoting complex subunit 5 from humans (Apc5), a component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitos ... | Domain |
G [auth K], O [auth Q] | PF12895 | Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) | Anaphase-promoting complex, cyclosome, subunit 3 | - | Repeat |
G [auth K], O [auth Q] | PF13424 | Tetratricopeptide repeat (TPR_12) | Tetratricopeptide repeat | - | Repeat |
H [auth C] | PF12861 | Anaphase-promoting complex subunit 11 RING-H2 finger (zf-ANAPC11) | Anaphase-promoting complex subunit 11 RING-H2 finger | Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome [1]. The APC subunits are cullin family proteins with ubiquitin ligase activity [2]. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried ou ... | Domain |
I [auth G], J [auth W] | PF10471 | Anaphase-promoting complex APC subunit CDC26 (ANAPC_CDC26) | Anaphase-promoting complex APC subunit CDC26 | - | Family |