6QLV | pdb_00006qlv

Crystal structure of W200H UbiX in complex with a geranyl-FMN N5 adduct

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6qlva_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
B	d6qlvb_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
C	d6qlvc_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
D	d6qlvd_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
E	d6qlve_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
F	d6qlvf_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
G	d6qlvg_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
H	d6qlvh_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
I	d6qlvi_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
K	d6qlvk_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
L	d6qlvl_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)
J	d6qlvj_	Alpha and beta proteins (a/b)	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	automated matches	automated matches	(Pseudomonas aeruginosa ) [TaxId: 287 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Homo-oligomeric flavin-containing Cys decarboxylases, HFCD	8096078	3001775	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Sigma70_r2,Sigma70_ner	e6qlvA1	A: alpha bundles	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)
B	Sigma70_r2,Sigma70_ner	e6qlvB1	A: alpha bundles	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)
C	Sigma70_r2,Sigma70_ner	e6qlvC1	A: alpha bundles	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)
D	Sigma70_r2,Sigma70_ner	e6qlvD1	A: alpha bundles	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)
E	Sigma70_r2,Sigma70_ner	e6qlvE1	A: alpha bundles	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)
F	Sigma70_r2,Sigma70_ner	e6qlvF1	A: alpha bundles	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)
G	Sigma70_r2,Sigma70_ner	e6qlvG1	A: alpha bundles	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)
H	Sigma70_r2,Sigma70_ner	e6qlvH1	A: alpha bundles	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)
I	Sigma70_r2,Sigma70_ner	e6qlvI1	A: alpha bundles	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)
K	Sigma70_r2,Sigma70_ner	e6qlvK1	A: alpha bundles	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)
L	Sigma70_r2,Sigma70_ner	e6qlvL1	A: alpha bundles	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)
J	Sigma70_r2,Sigma70_ner	e6qlvJ1	A: alpha bundles	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)
B	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)
C	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)
D	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)
E	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)
F	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)
G	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)
H	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)
I	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)
K	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)
L	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)
J	3.40.50.1950	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavin prenyltransferase-like	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Flavin prenyltransferase UbiX	prenyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity flavin prenyltransferase activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding carboxy-lyase activity lyase activity carbon-carbon lyase activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036551	Flavin prenyltransferase-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR003382	Flavoprotein	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR004507	Flavin prenyltransferase UbiX-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.