6QTP | pdb_00006qtp

2.37A structure of gepotidacin with S.aureus DNA gyrase and uncleaved DNA


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth C]e6qtpC1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
B [auth A]e6qtpA1 A: PriB N-terminal domain-likeX: Rubredoxin-relatedH: Aconitase iron-sulfur domainT:F:ECOD (20:10:01)
C [auth D]e6qtpD1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: DNA_gyraseB_C,ToprimF:ECOD (20:10:01)
A [auth B]e6qtpB1 A: Nat/IvyX: Acyl-CoA N-acyltransferases (Nat)H: Acyl-CoA N-acyltransferases (Nat)T: DNA_gyraseB_C,ToprimF:ECOD (20:10:01)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E, F
DNA (5'-D(*GP*AP*GP*CP*GP*TP*AP*CP*AP*GP*CP*TP*GP*TP*AP*CP*GP*CP*TP*T)-3')---
B [auth A],
D [auth C]
DNA gyrase subunit A
A [auth B],
C [auth D]
DNA gyrase subunit B,DNA gyrase subunit B

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth A],
D [auth C]
IPR035516DNA gyrase/topoisomerase IV, subunit A, C-terminalHomologous Superfamily
B [auth A],
D [auth C]
IPR050220Type II DNA TopoisomerasesFamily
B [auth A],
D [auth C]
IPR013760DNA topoisomerase, type IIA-like domain superfamilyHomologous Superfamily
B [auth A],
D [auth C]
IPR013757DNA topoisomerase, type IIA, alpha-helical domain superfamilyHomologous Superfamily
B [auth A],
D [auth C]
IPR013758DNA topoisomerase, type IIA, domain A, alpha-betaHomologous Superfamily
B [auth A],
D [auth C]
IPR005743DNA gyrase, subunit AFamily
B [auth A],
D [auth C]
IPR006691DNA gyrase/topoisomerase IV, subunit A, C-terminal repeatRepeat
B [auth A],
D [auth C]
IPR002205DNA topoisomerase, type IIA, domain ADomain
A [auth B],
C [auth D]
IPR011557DNA gyrase, subunit BFamily
A [auth B],
C [auth D]
IPR034160DNA gyrase subunit B, TOPRIM domainDomain
A [auth B],
C [auth D]
IPR018522DNA topoisomerase, type IIA, conserved siteConserved Site
A [auth B],
C [auth D]
IPR013506DNA topoisomerase, type IIA, subunit B, domain 2Domain
A [auth B],
C [auth D]
IPR013760DNA topoisomerase, type IIA-like domain superfamilyHomologous Superfamily
A [auth B],
C [auth D]
IPR036890Histidine kinase/HSP90-like ATPase superfamilyHomologous Superfamily
A [auth B],
C [auth D]
IPR006171TOPRIM domainDomain
A [auth B],
C [auth D]
IPR000565DNA topoisomerase, type IIA, subunit BFamily
A [auth B],
C [auth D]
IPR003594Histidine kinase/HSP90-like ATPase domainDomain
A [auth B],
C [auth D]
IPR013759DNA topoisomerase, type IIA, subunit B, C-terminalHomologous Superfamily
A [auth B],
C [auth D]
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
A [auth B],
C [auth D]
IPR001241DNA topoisomerase, type IIAFamily
A [auth B],
C [auth D]
IPR002288DNA gyrase B subunit, C-terminalDomain
A [auth B],
C [auth D]
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily