6R7Q

Structure of XBP1u-paused ribosome nascent chain complex with Sec61.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth AA]SCOP2B SuperfamilyRibosomal protein S30e-like 8053455 3002190 SCOP2B (2022-06-29)
C [auth CC]SCOP2B Superfamily50S Ribosomal protein L14-like 8053075 3000433 SCOP2B (2022-06-29)
E [auth EE]SCOP2B SuperfamilyNucleic acid-binding proteins 8052707 3000135 SCOP2B (2022-06-29)
E [auth EE]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like 8052708 3002138 SCOP2B (2022-06-29)
F [auth FF]SCOP2B SuperfamilyNucleic acid-binding proteins 8095265 3000135 SCOP2B (2022-06-29)
I [auth II]SCOP2B SuperfamilyS13-like H2TH domain 8101439 3000053 SCOP2B (2022-06-29)
W [auth 9]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052584 3000068 SCOP2B (2022-06-29)
Y [auth OO]SCOP2B SuperfamilyWinged helix DNA-binding domain 8090991 3000034 SCOP2B (2022-06-29)
AA [auth QQ]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8052971 3001284 SCOP2B (2022-06-29)
AA [auth QQ]SCOP2B SuperfamilyHomeodomain-like 8052970 3000001 SCOP2B (2022-06-29)
BA [auth RR]SCOP2B SuperfamilyL30e-like 8063980 3001739 SCOP2B (2022-06-29)
DA [auth B]SCOP2B SuperfamilyTranslational proteins 8078357 3000811 SCOP2B (2022-06-29)
EA [auth C]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like 8052828 3002143 SCOP2B (2022-06-29)
EA [auth C]SCOP2B SuperfamilyRibosomal protein L4 8052829 3001146 SCOP2B (2022-06-29)
KA [auth I]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8097320 3000884 SCOP2B (2022-06-29)
LA [auth J]SCOP2B SuperfamilyRL5-like 8073894 3001709 SCOP2B (2022-06-29)
PA [auth N]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8082477 3000210 SCOP2B (2022-06-29)
SA [auth Q]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8095982 3001045 SCOP2B (2022-06-29)
XA [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like 8072048 3000433 SCOP2B (2022-06-29)
AB [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076754 3000334 SCOP2B (2022-06-29)
BB [auth Z]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053047 3000334 SCOP2B (2022-06-29)
CB [auth SS]SCOP2B SuperfamilyWinged helix DNA-binding domain 8055720 3000034 SCOP2B (2022-06-29)
DB [auth a]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8097818 3001045 SCOP2B (2022-06-29)
FB [auth c]SCOP2B SuperfamilyL30e-like 8094953 3001739 SCOP2B (2022-06-29)
HB [auth e]SCOP2B SuperfamilyRibosomal protein L32e 8102088 3000982 SCOP2B (2022-06-29)
IB [auth f]SCOP2B SuperfamilyTranslational proteins 8093714 3000811 SCOP2B (2022-06-29)
JB [auth g]SCOP2B SuperfamilyRibosomal protein L34e-like 8103328 3002203 SCOP2B (2022-06-29)
LB [auth i]SCOP2B SuperfamilyRibosomal protein L36e 8053119 3002161 SCOP2B (2022-06-29)
OB [auth l]SCOP2B SuperfamilyRibosomal protein L39e 8095597 3001756 SCOP2B (2022-06-29)
SB [auth p]SCOP2B SuperfamilyZn-binding ribosomal proteins 8101435 3001320 SCOP2B (2022-06-29)
XB [auth u]SCOP2B SuperfamilyRibosomal S3Ae-like 8053216 3002166 SCOP2B (2022-06-29)
AC [auth x]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8052745 3001473 SCOP2B (2022-06-29)
AC [auth x]SCOP2B SuperfamilyNucleic acid-binding proteins 8052746 3000135 SCOP2B (2022-06-29)
AC [auth x]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8052747 3000334 SCOP2B (2022-06-29)
BC [auth y]SCOP2B SuperfamilyRibosomal protein S7 8066001 3000799 SCOP2B (2022-06-29)
DC [auth TT]SCOP2B SuperfamilyRibosomal protein S8 8079081 3000709 SCOP2B (2022-06-29)
EC [auth UU]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082683 3000100 SCOP2B (2022-06-29)
HC [auth XX]SCOP2B SuperfamilySecY-like 8056967 3000333 SCOP2B (2022-06-29)
IC [auth YY]SCOP2B SuperfamilyProtein translocase subunit SecE-like 8053309 3002174 SCOP2B (2022-06-29)
Z [auth PP]SCOP2B SuperfamilyWinged helix DNA-binding domain 8089322 3000034 SCOP2B (2022-06-29)
ZA [auth X]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8095966 3000210 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth AA]Ribosomal_S30e6r7qAA1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: Ribosomal_S30ECOD (1.6)
C [auth CC]Ribosomal_S8ee6r7qCC1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_S8eECOD (1.6)
D [auth DD]S4e6r7qDD1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
E [auth EE]Ribosomal_S17_1e6r7qEE1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
F [auth FF]Ribosomal_S28ee6r7qFF1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S28eECOD (1.6)
H [auth HH]Ribosomal_S21ee6r7qHH1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: Ribosomal_S21eECOD (1.6)
I [auth II]Ribosomal_S13e6r7qII1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13ECOD (1.6)
J [auth JJ]Ribosomal_S27ee6r7qJJ1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27eECOD (1.6)
K [auth KK]Ribosomal_S17ee6r7qKK1 A: alpha arraysX: HTHH: HTHT: FF domainF: Ribosomal_S17eECOD (1.6)
L [auth LL]Ribosomal_S26ee6r7qLL1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S26eECOD (1.6)
M [auth MM]Ribosomal_S11e6r7qMM1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
N [auth 0]Ribosomal_S27e6r7q01 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27ECOD (1.6)
T [auth 6]DUF1899e6r7q61 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: DUF1899ECOD (1.6)
W [auth 9]Ribosomal_S14_2e6r7q91 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_2ECOD (1.6)
X [auth NN]Ribosomal_S24ee6r7qNN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_S24eECOD (1.6)
Y [auth OO]Ribosomal_S25e6r7qOO1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S25ECOD (1.6)
AA [auth QQ]Ribosomal_S13_Ne6r7qQQ1 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: Ribosomal_S13_NECOD (1.6)
AA [auth QQ]Ribosomal_S15_2e6r7qQQ2 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_2ECOD (1.6)
BA [auth RR]Ribosomal_L7Aee6r7qRR1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
CA [auth A]Ribosomal_L2_1e6r7qA1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
CA [auth A]Ribosomal_L2_C_2e6r7qA2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_C_2ECOD (1.6)
DA [auth B]Ribosomal_L3e6r7qB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
EA [auth C]Ribosomal_L4e6r7qC2 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
EA [auth C]Ribos_L4_asso_Ce6r7qC1 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: Ribos_L4_asso_CECOD (1.6)
FA [auth D]Ribosomal_L5ee6r7qD1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L5eECOD (1.6)
GA [auth E]Ribosomal_L6ee6r7qE1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L6eECOD (1.6)
IA [auth G]Ribosomal_L7Ae_1e6r7qG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
JA [auth H]Ribosomal_L6_2e6r7qH2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_2ECOD (1.6)
JA [auth H]Ribosomal_L6e6r7qH1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
KA [auth I]Ribosomal_L16e6r7qI1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
LA [auth J]Ribosomal_L5_Ce6r7qJ1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
NA [auth L]Ribosomal_L13ee6r7qL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: Ribosomal_L13eECOD (1.6)
OA [auth M]Ribosomal_L14ee6r7qM1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L14eECOD (1.6)
PA [auth N]Ribosomal_L15ee6r7qN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L15eECOD (1.6)
QA [auth O]Ribosomal_L13e6r7qO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
RA [auth P]Ribosomal_L22e6r7qP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
SA [auth Q]Ribosomal_L18e6r7qQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
TA [auth R]Ribosomal_L19e_Ne6r7qR1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: Ribosomal_L19e_NECOD (1.6)
TA [auth R]Ribosomal_L19e_Ce6r7qR2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: Ribosomal_L19e_CECOD (1.6)
UA [auth S]Ribosomal_L18Ae6r7qS2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: Ribosomal_L18AECOD (1.6)
VA [auth T]Ribosomal_L21ee6r7qT1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L21eECOD (1.6)
WA [auth U]Ribosomal_L22ee6r7qU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: Ribosomal_L22eECOD (1.6)
XA [auth V]Ribosomal_L14e6r7qV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
YA [auth W]Ribosomal_L24ee6r7qW1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_L24eECOD (1.6)
AB [auth Y]Ribosomal_L26e6r7qY1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L26ECOD (1.6)
BB [auth Z]Ribosomal_L27ee6r7qZ1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L27eECOD (1.6)
CB [auth SS]S10_plectine6r7qSS1 A: alpha arraysX: HTHH: HTHT: wingedF: S10_plectinECOD (1.6)
DB [auth a]Ribosomal_L18e6r7qa1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
EB [auth b]Ribosomal_L29ee6r7qb1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: Ribosomal_L29eECOD (1.6)
FB [auth c]Ribosomal_L7Aee6r7qc1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
GB [auth d]Ribosomal_L31ee6r7qd1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: Ribosomal_L31eECOD (1.6)
HB [auth e]Ribosomal_L32ee6r7qe1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: Ribosomal_L32eECOD (1.6)
IB [auth f]Ribosomal_L35Aee6r7qf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L35AeECOD (1.6)
JB [auth g]Ribosomal_L34ee6r7qg1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: Ribosomal_L34eECOD (1.6)
KB [auth h]Ribosomal_L29_2e6r7qh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29_2ECOD (1.6)
LB [auth i]Ribosomal_L36ee6r7qi1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: Ribosomal_L36eECOD (1.6)
MB [auth j]Ribosomal_L37ee6r7qj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37eECOD (1.6)
NB [auth k]Ribosomal_L38ee6r7qk1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: Ribosomal_L38eECOD (1.6)
OB [auth l]Ribosomal_L39e6r7ql1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: Ribosomal_L39ECOD (1.6)
PB [auth m]Ribosomal_L40ee6r7qm1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L40eECOD (1.6)
QB [auth n]Ribosomal_L41e6r7qn1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: Ribosomal_L41ECOD (1.6)
RB [auth o]Ribosomal_L44e6r7qo1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L44ECOD (1.6)
SB [auth p]Ribosomal_L37aee6r7qp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37aeECOD (1.6)
TB [auth q]Ribosomal_S2_2e6r7qq1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_2ECOD (1.6)
UB [auth r]Ribosomal_L28ee6r7qr1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: Ribosomal_L28eECOD (1.6)
VB [auth s]Ribosomal_L10e6r7qs2 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)
VB [auth s]Ribosomal_P0_L10ee6r7qs1 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: Ribosomal_P0_L10eECOD (1.6)
WB [auth t]Ribosomal_L11e6r7qt2 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
WB [auth t]Ribosomal_L11_Ne6r7qt1 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
XB [auth u]Ribosomal_S3Ae_Ne6r7qu2 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: Ribosomal_S3Ae_NECOD (1.6)
XB [auth u]Ribosomal_S3Ae_Ce6r7qu1 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: Ribosomal_S3Ae_CECOD (1.6)
YB [auth v]Ribosomal_S5_C_1e6r7qv1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_C_1ECOD (1.6)
YB [auth v]Ribosomal_S5_3e6r7qv2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_3ECOD (1.6)
YB [auth v]Ribosomal_S5_2e6r7qv3 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: Ribosomal_S5_2ECOD (1.6)
ZB [auth w]Ribosomal_S3_Ce6r7qw1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
ZB [auth w]KH_2_3e6r7qw2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_3ECOD (1.6)
AC [auth x]Ribosomal_S4ee6r7qx2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S4eECOD (1.6)
AC [auth x]40S_S4_Ce6r7qx3 A: beta barrelsX: SH3H: SH3T: SH3F: 40S_S4_CECOD (1.6)
AC [auth x]RS4NTe6r7qx1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: RS4NTECOD (1.6)
BC [auth y]Ribosomal_S7_1e6r7qy1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
CC [auth z]Ribosomal_S6ee6r7qz1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_S6eECOD (1.6)
DC [auth TT]Ribosomal_S8_N_1e6r7qTT2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_N_1ECOD (1.6)
DC [auth TT]Ribosomal_S8_C_1e6r7qTT1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_C_1ECOD (1.6)
EC [auth UU]Ribosomal_S9e6r7qUU1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
FC [auth VV]Ribosom_S12_S23e6r7qVV1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
GC [auth WW]Ribosomal_S19e6r7qWW1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
HC [auth XX]SecYe6r7qXX1 A: alpha complex topologyX: Preprotein translocase SecY subunit (From Topology)H: Preprotein translocase SecY subunit (From Topology)T: Preprotein translocase SecY subunitF: SecYECOD (1.6)
IC [auth YY]SecE_1e6r7qYY1 A: extended segmentsX: Preprotein translocase SecE subunit (From Topology)H: Preprotein translocase SecE subunit (From Topology)T: Preprotein translocase SecE subunitF: SecE_1ECOD (1.6)
JC [auth ZZ]Sec61_betae6r7qZZ1 A: extended segmentsX: Sec-beta subunit (From Topology)H: Sec-beta subunit (From Topology)T: Sec-beta subunitF: Sec61_betaECOD (1.6)
B [auth BB]Ribosomal_S7e_Ne6r7qBB1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_NECOD (1.6)
B [auth BB]Ribosomal_S7e_C_1e6r7qBB2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_C_1ECOD (1.6)
Z [auth PP]Ribosomal_S19ee6r7qPP1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S19eECOD (1.6)
HA [auth F]Ribosomal_L30_1e6r7qF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30_1ECOD (1.6)
ZA [auth X]Ribosomal_L23_3e6r7qX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_3ECOD (1.6)
G [auth GG]Ribosomal_S10_1e6r7qGG1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth AA]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
C [auth CC]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
D [auth DD]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
D [auth DD]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
E [auth EE]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
E [auth EE]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
F [auth FF]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
I [auth II]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
J [auth JJ]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
K [auth KK]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
N [auth 0]PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
N [auth 0]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
T [auth 6]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
W [auth 9]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
Y [auth OO]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family
AA [auth QQ]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
AA [auth QQ]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
BA [auth RR]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
CA [auth A]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
CA [auth A]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
CA [auth A]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
DA [auth B]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
DA [auth B]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
EA [auth C]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
EA [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
EA [auth C]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
FA [auth D]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
GA [auth E]PF03868Ribosomal protein L6, N-terminal domain (Ribosomal_L6e_N)Ribosomal protein L6, N-terminal domain- Domain
GA [auth E]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
IA [auth G]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
JA [auth H]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
JA [auth H]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
KA [auth I]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
KA [auth I]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
LA [auth J]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
LA [auth J]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
NA [auth L]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
OA [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
PA [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
QA [auth O]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
RA [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
RA [auth P]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
SA [auth Q]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
TA [auth R]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
VA [auth T]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
VA [auth T]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
VA [auth T]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
WA [auth U]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
XA [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
YA [auth W]PF07650KH domain (KH_2)KH domain- Domain
YA [auth W]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
AB [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
AB [auth Y]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
AB [auth Y]PF00467KOW motif (KOW)KOW motif- Family
BB [auth Z]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
BB [auth Z]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
BB [auth Z]PF00467KOW motif (KOW)KOW motif- Family
CB [auth SS]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
DC [auth TT]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
EC [auth UU]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
FC [auth VV]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
GC [auth WW]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
HC [auth XX]PF10559Plug domain of Sec61p (Plug_translocon)Plug domain of Sec61pThe Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side.The plug is unl ...The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side.The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 [1].
Domain
HC [auth XX]PF00344SecY (SecY)SecY- Family
IC [auth YY]PF00584SecE/Sec61-gamma subunits of protein translocation complex (SecE)SecE/Sec61-gamma subunits of protein translocation complex- Family
JC [auth ZZ]PF03911Sec61beta family (Sec61_beta)Sec61beta family- Family
Z [auth PP]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
HA [auth F]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
HA [auth F]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
ZA [auth X]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
ZA [auth X]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
ZA [auth X]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth AA]40S ribosomal protein S30
C [auth CC]40S ribosomal protein S8
D [auth DD]Ribosomal protein S9 (Predicted)
E [auth EE]Ribosomal protein S11
F [auth FF]Ribosomal protein S28
H [auth HH]eS21---
I [auth II]uS13
J [auth JJ]40S ribosomal protein S27
K [auth KK]eS17
L [auth LL]eS26---
M [auth MM]uS11---
N [auth 0]eS31
O [auth 1]X-box-binding protein 1
P [auth 2]P-tRNA---
Q [auth 3]E-tRNA---
R [auth 4]messenger RNA---
S [auth 5]28S ribosomal RNA---
T [auth 6]ribosomal protein RACK1
V [auth 8]5.8S ribosomal RNA---
W [auth 9]uS14
X [auth NN]eS24---
Y [auth OO]ribosomal protein eS25
AA [auth QQ]ribosomal protein uS15
BA [auth RR]40S ribosomal protein S12
CA [auth A]uL2
DA [auth B]uL3
EA [auth C]uL4
FA [auth D]60S ribosomal protein L5
GA [auth E]60S ribosomal protein L6
IA [auth G]eL8
JA [auth H]uL6
KA [auth I]Ribosomal protein L10 (Predicted)
LA [auth J]Ribosomal protein L11
MA [auth K]18S ribosomal RNA---
NA [auth L]60S ribosomal protein L13- - -
OA [auth M]Ribosomal protein L14
PA [auth N]Ribosomal protein L15
QA [auth O]uL13---
RA [auth P]uL22
SA [auth Q]eL18
TA [auth R]eL19---
UA [auth S]eL20---
VA [auth T]eL21
WA [auth U]eL22---
XA [auth V]eL14
YA [auth W]Ribosomal protein L24
AB [auth Y]Ribosomal protein L26
BB [auth Z]60S ribosomal protein L27
CB [auth SS]eS10 -
DB [auth a]uL15
EB [auth b]eL29
FB [auth c]eL30
GB [auth d]eL31
HB [auth e]eL32
IB [auth f]eL33
JB [auth g]eL34
KB [auth h]uL29
LB [auth i]60S ribosomal protein L36
MB [auth j]Ribosomal protein L37
NB [auth k]eL38---
OB [auth l]eL39
PB [auth m]eL40---
QB [auth n]60s ribosomal protein l41
RB [auth o]eL42
SB [auth p]ribosomal protein eL43
TB [auth q]uS2---
UB [auth r]eL28
VB [auth s]60S acidic ribosomal protein P0---
WB [auth t]uL11
XB [auth u]40S ribosomal protein S3a
YB [auth v]uS5---
ZB [auth w]Ribosomal protein S3
AC [auth x]40S ribosomal protein S4
BC [auth y]Ribosomal protein S5
CC [auth z]40S ribosomal protein S6
DC [auth TT]Ribosomal protein S15a
EC [auth UU]Ribosomal protein S16
FC [auth VV]Ribosomal protein S23
GC [auth WW]uS19
HC [auth XX]Protein transport protein Sec61 subunit alpha isoform 1
IC [auth YY]Protein transport protein Sec61 subunit gamma
JC [auth ZZ]Protein transport protein Sec61 subunit beta
B [auth BB]40S ribosomal protein S7
U [auth 7]5S ribosomal RNA---
Z [auth PP]eS19
HA [auth F]uL30
ZA [auth X]uL23
G [auth GG]uS10---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth AA]IPR039415Ubiquitin-like protein FUBIDomain
A [auth AA]IPR019956Ubiquitin domainDomain
A [auth AA]IPR019954Ubiquitin conserved siteConserved Site
A [auth AA]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
A [auth AA]IPR000626Ubiquitin-like domainDomain
A [auth AA]IPR006846Small ribosomal subunit protein eS30Family
C [auth CC]IPR001047Small ribosomal subunit protein eS8Family
C [auth CC]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
C [auth CC]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
C [auth CC]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
D [auth DD]IPR002942RNA-binding S4 domainDomain
D [auth DD]IPR022801Small ribosomal subunit protein uS4Family
D [auth DD]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
D [auth DD]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
D [auth DD]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
D [auth DD]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth EE]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
E [auth EE]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
E [auth EE]IPR000266Small ribosomal subunit protein uS17Family
E [auth EE]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
E [auth EE]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
F [auth FF]IPR028626Ribosomal protein eS28 conserved siteConserved Site
F [auth FF]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
F [auth FF]IPR000289Small ribosomal subunit protein eS28Family
I [auth II]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
I [auth II]IPR001892Small ribosomal subunit protein uS13Family
I [auth II]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
I [auth II]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
J [auth JJ]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
J [auth JJ]IPR000592Small ribosomal subunit protein eS27Family
J [auth JJ]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
K [auth KK]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
K [auth KK]IPR001210Small ribosomal subunit protein eS17Family
K [auth KK]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
N [auth 0]IPR019954Ubiquitin conserved siteConserved Site
N [auth 0]IPR000626Ubiquitin-like domainDomain
N [auth 0]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
N [auth 0]IPR002906Small ribosomal subunit protein eS31Domain
N [auth 0]IPR019956Ubiquitin domainDomain
N [auth 0]IPR050158Ubiquitin and ubiquitin-likeFamily
N [auth 0]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
N [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
O [auth 1]IPR052470Endoplasmic Reticulum Stress-Regulated Transcription FactorFamily
O [auth 1]IPR046347Basic-leucine zipper domain superfamilyHomologous Superfamily
O [auth 1]IPR004827Basic-leucine zipper domainDomain
T [auth 6]IPR019775WD40 repeat, conserved siteConserved Site
T [auth 6]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
T [auth 6]IPR045223Small ribosomal subunit protein RACK1-likeFamily
T [auth 6]IPR001680WD40 repeatRepeat
T [auth 6]IPR020472G-protein beta WD-40 repeatRepeat
T [auth 6]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
W [auth 9]IPR001209Small ribosomal subunit protein uS14Family
W [auth 9]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
W [auth 9]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
W [auth 9]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
Y [auth OO]IPR004977Small ribosomal subunit protein eS25Family
Y [auth OO]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
AA [auth QQ]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
AA [auth QQ]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
AA [auth QQ]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
AA [auth QQ]IPR000589Small ribosomal subunit protein uS15Family
BA [auth RR]IPR000530Small ribosomal subunit protein eS12Family
BA [auth RR]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
BA [auth RR]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
BA [auth RR]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
CA [auth A]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
CA [auth A]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
CA [auth A]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CA [auth A]IPR023672Large ribosomal subunit protein uL2, archaeal-typeFamily
CA [auth A]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
CA [auth A]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
CA [auth A]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
CA [auth A]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
CA [auth A]IPR002171Large ribosomal subunit protein uL2Family
DA [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
DA [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
DA [auth B]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
DA [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
DA [auth B]IPR000597Large ribosomal subunit protein uL3Family
EA [auth C]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
EA [auth C]IPR002136Large ribosomal subunit protein uL4Family
EA [auth C]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
EA [auth C]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
EA [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
FA [auth D]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
FA [auth D]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
GA [auth E]IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
GA [auth E]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
GA [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
GA [auth E]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
GA [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
GA [auth E]IPR000915Large ribosomal subunit protein eL6Family
IA [auth G]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
IA [auth G]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
IA [auth G]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
IA [auth G]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
IA [auth G]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
JA [auth H]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
JA [auth H]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
JA [auth H]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
JA [auth H]IPR000702Large ribosomal subunit protein uL6-likeFamily
KA [auth I]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
KA [auth I]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
KA [auth I]IPR016180Large ribosomal subunit protein uL16 domainDomain
KA [auth I]IPR047873Large ribosomal subunit protein uL16Family
KA [auth I]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
LA [auth J]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
LA [auth J]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
LA [auth J]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
LA [auth J]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
LA [auth J]IPR002132Large ribosomal subunit protein uL5Family
OA [auth M]IPR039660Large ribosomal subunit protein eL14Family
OA [auth M]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
OA [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
OA [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
OA [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
PA [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
PA [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
PA [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
PA [auth N]IPR000439Large ribosomal subunit protein eL15Family
RA [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
RA [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
RA [auth P]IPR001063Large ribosomal subunit protein uL22Family
RA [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
SA [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
SA [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
SA [auth Q]IPR000039Large ribosomal subunit protein eL18Family
SA [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
VA [auth T]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
VA [auth T]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
VA [auth T]IPR001147Large ribosomal subunit protein eL21Family
VA [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
XA [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
XA [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
XA [auth V]IPR000218Large ribosomal subunit protein uL14Family
YA [auth W]IPR011017TRASH domainDomain
YA [auth W]IPR000988Large ribosomal subunit protein eL24-relatedFamily
YA [auth W]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
YA [auth W]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
AB [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
AB [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AB [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
AB [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
AB [auth Y]IPR005824KOWDomain
AB [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
BB [auth Z]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
BB [auth Z]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BB [auth Z]IPR001141Large ribosomal subunit protein eL27Family
BB [auth Z]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
BB [auth Z]IPR005824KOWDomain
BB [auth Z]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
CB [auth SS]IPR037447Small ribosomal subunit protein eS10Family
CB [auth SS]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
CB [auth SS]IPR005326Plectin/eS10, N-terminalDomain
DB [auth a]IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
DB [auth a]IPR021131Large ribosomal subunit protein uL15/eL18Domain
DB [auth a]IPR030878Large ribosomal subunit protein uL15Family
DB [auth a]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
DB [auth a]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
EB [auth b]IPR002673Large ribosomal subunit protein eL29Family
FB [auth c]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
FB [auth c]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
FB [auth c]IPR000231Large ribosomal subunit protein eL30Family
FB [auth c]IPR039109Large ribosomal subunit protein eL30-likeFamily
FB [auth c]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
GB [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
GB [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
GB [auth d]IPR000054Large ribosomal subunit protein eL31Family
HB [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
HB [auth e]IPR001515Large ribosomal subunit protein eL32Family
HB [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
IB [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
IB [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IB [auth f]IPR001780Large ribosomal subunit protein eL33Family
IB [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
JB [auth g]IPR008195Large ribosomal subunit protein eL34Family
JB [auth g]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
KB [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
KB [auth h]IPR001854Large ribosomal subunit protein uL29Family
KB [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
KB [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
LB [auth i]IPR000509Large ribosomal subunit protein eL36Family
LB [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
MB [auth j]IPR001569Large ribosomal subunit protein eL37Family
MB [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
MB [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
MB [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
OB [auth l]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
OB [auth l]IPR000077Large ribosomal subunit protein eL39Family
OB [auth l]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
QB [auth n]IPR007836Large ribosomal subunit protein eS32Family
RB [auth o]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
RB [auth o]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
RB [auth o]IPR000552Large ribosomal subunit protein eL42Family
SB [auth p]IPR002674Large ribosomal subunit protein eL43Family
SB [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
SB [auth p]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
UB [auth r]IPR029004Ribosomal eL28/Mak16Domain
UB [auth r]IPR002672Large ribosomal subunit protein eL28Family
WB [auth t]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
WB [auth t]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
WB [auth t]IPR000911Ribosomal protein uL11Family
WB [auth t]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
WB [auth t]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
WB [auth t]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
XB [auth u]IPR001593Small ribosomal subunit protein eS1Family
XB [auth u]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
XB [auth u]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
ZB [auth w]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
ZB [auth w]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
ZB [auth w]IPR004044K Homology domain, type 2Domain
ZB [auth w]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
ZB [auth w]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
ZB [auth w]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
ZB [auth w]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
AC [auth x]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
AC [auth x]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
AC [auth x]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
AC [auth x]IPR002942RNA-binding S4 domainDomain
AC [auth x]IPR013845Small ribosomal subunit protein eS4, central regionDomain
AC [auth x]IPR000876Small ribosomal subunit protein eS4Family
AC [auth x]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
AC [auth x]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
AC [auth x]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
AC [auth x]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
AC [auth x]IPR005824KOWDomain
BC [auth y]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
BC [auth y]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
BC [auth y]IPR000235Small ribosomal subunit protein uS7Family
BC [auth y]IPR023798Small ribosomal subunit protein uS7 domainDomain
BC [auth y]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
CC [auth z]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
CC [auth z]IPR001377Small ribosomal subunit protein eS6Family
CC [auth z]IPR014401Small ribosomal subunit protein eS6-likeFamily
DC [auth TT]IPR000630Small ribosomal subunit protein uS8Family
DC [auth TT]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
DC [auth TT]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
EC [auth UU]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
EC [auth UU]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
EC [auth UU]IPR000754Small ribosomal subunit protein uS9Family
EC [auth UU]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
FC [auth VV]IPR006032Small ribosomal subunit protein uS12Family
FC [auth VV]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
FC [auth VV]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
GC [auth WW]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
GC [auth WW]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
GC [auth WW]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
GC [auth WW]IPR002222Small ribosomal subunit protein uS19Family
HC [auth XX]IPR002208SecY/SEC61-alpha familyFamily
HC [auth XX]IPR030659SecY conserved siteConserved Site
HC [auth XX]IPR023201SecY domain superfamilyHomologous Superfamily
HC [auth XX]IPR019561Translocon Sec61/SecY, plug domainDomain
IC [auth YY]IPR008158Protein translocase SEC61 complex, gamma subunitFamily
IC [auth YY]IPR001901Protein translocase complex, SecE/Sec61-gamma subunitFamily
IC [auth YY]IPR023391Protein translocase SecE domain superfamilyHomologous Superfamily
JC [auth ZZ]IPR016482Protein transport protein SecG/Sec61-beta/SbhFamily
JC [auth ZZ]IPR030671Protein transport Sec61-beta/SbhFamily
B [auth BB]IPR000554Small ribosomal subunit protein eS7Family
B [auth BB]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
Z [auth PP]IPR001266Small ribosomal subunit protein eS19Family
Z [auth PP]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
Z [auth PP]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
Z [auth PP]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
HA [auth F]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
HA [auth F]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
HA [auth F]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
HA [auth F]IPR039699Large ribosomal subunit protein uL30Family
HA [auth F]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
HA [auth F]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
HA [auth F]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
ZA [auth X]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
ZA [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
ZA [auth X]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
ZA [auth X]IPR019985Large ribosomal subunit protein uL23Family
ZA [auth X]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
ZA [auth X]IPR013025Large ribosomal subunit protein uL23-likeFamily