Crystal structure of the OmpK36 GD insertion chimera from Klebsiella pneumonia
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | d6rckc1 | Membrane and cell surface proteins and peptides | Transmembrane beta-barrels | Porins | Porin | automated matches | (Klebsiella pneumoniae ) [TaxId: 573 ], | SCOPe (2.08) |
| C | d6rckc2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Klebsiella pneumoniae ) [TaxId: 573 ], | SCOPe (2.08) |
| B | d6rckb1 | Membrane and cell surface proteins and peptides | Transmembrane beta-barrels | Porins | Porin | automated matches | (Klebsiella pneumoniae ) [TaxId: 573 ], | SCOPe (2.08) |
| B | d6rckb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Klebsiella pneumoniae ) [TaxId: 573 ], | SCOPe (2.08) |
| A | d6rcka1 | Membrane and cell surface proteins and peptides | Transmembrane beta-barrels | Porins | Porin | automated matches | (Klebsiella pneumoniae ) [TaxId: 573 ], | SCOPe (2.08) |
| A | d6rcka2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Klebsiella pneumoniae ) [TaxId: 573 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C | SCOP2B Superfamily | Porins | 8093808 | 3000224 | SCOP2B (2022-06-29) |
| B | SCOP2 Family | Porin | 8093807 | 4003061 | SCOP2 (2022-06-29) |
| B | SCOP2 Superfamily | Porins | 8093808 | 3000224 | SCOP2 (2022-06-29) |
| A | SCOP2B Superfamily | Porins | 8093808 | 3000224 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | Metallophos | e6rckC1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: Metallophos | ECOD (v294.1) |
| B | Metallophos | e6rckB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: Metallophos | ECOD (v294.1) |
| A | Metallophos | e6rckA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: DUF1107-like | T: DUF1107-like | F: Metallophos | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C | 2.40.160.10 | Mainly Beta | Beta Barrel | Porin | Porin | CATH (utative) |
| B | 2.40.160.10 | Mainly Beta | Beta Barrel | Porin | Porin | CATH (utative) |
| A | 2.40.160.10 | Mainly Beta | Beta Barrel | Porin | Porin | CATH (utative) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| OmpK36 |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR050298 | Gram-negative bacterial outer membrane porin | Family | |
| IPR023614 | Porin domain superfamily | Homologous Superfamily | |
| IPR001702 | Porin, Gram-negative type | Family | |
| IPR013793 | Porin, Gram-negative type, conserved site | Conserved Site | |
| IPR001897 | Porin, gammaproteobacterial | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Beta-barrel transmembrane | Trimeric porins (n=16,S=20) | General Bacterial Porin (GBP) |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: BETA-BARREL | Beta-Barrel Membrane Proteins: Porins and Relatives | OmpK36 osmoporin, wild-type |
