6RCP | pdb_00006rcp

Crystal structure of the OmpK36 clinical isolate ST258 from Klebsiella pneumonia

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Porins	8093826	3000224	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Porins	8093826	3000224	SCOP2B (2022-06-29)
C [auth E]	SCOP2B Superfamily	Porins	8093826	3000224	SCOP2B (2022-06-29)
D [auth G]	SCOP2B Superfamily	Porins	8093826	3000224	SCOP2B (2022-06-29)
E [auth H]	SCOP2B Superfamily	Porins	8093826	3000224	SCOP2B (2022-06-29)
G [auth K]	SCOP2B Superfamily	Porins	8093826	3000224	SCOP2B (2022-06-29)
H [auth L]	SCOP2B Superfamily	Porins	8093826	3000224	SCOP2B (2022-06-29)
I [auth N]	SCOP2B Superfamily	Porins	8093826	3000224	SCOP2B (2022-06-29)
J [auth O]	SCOP2B Superfamily	Porins	8093826	3000224	SCOP2B (2022-06-29)
K [auth P]	SCOP2B Superfamily	Porins	8093826	3000224	SCOP2B (2022-06-29)
L [auth Q]	SCOP2 Family	Porin	8093825	4003061	SCOP2 (2022-06-29)
L [auth Q]	SCOP2 Superfamily	Porins	8093826	3000224	SCOP2 (2022-06-29)
M [auth R]	SCOP2B Superfamily	Porins	8093826	3000224	SCOP2B (2022-06-29)
N [auth F]	SCOP2B Superfamily	Porins	8093826	3000224	SCOP2B (2022-06-29)
Q [auth M]	SCOP2B Superfamily	Porins	8093826	3000224	SCOP2B (2022-06-29)
R [auth C]	SCOP2B Superfamily	Porins	8093826	3000224	SCOP2B (2022-06-29)
P [auth J]	SCOP2B Superfamily	Porins	8093826	3000224	SCOP2B (2022-06-29)
O [auth D]	SCOP2B Superfamily	Porins	8093826	3000224	SCOP2B (2022-06-29)
F [auth I]	SCOP2B Superfamily	Porins	8093826	3000224	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	MAM33	e6rcpA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Hemagglutinin HA2 chain	T: Hemagglutinin HA2 chain	F: MAM33	ECOD (v294.1)
B	Metallophos	e6rcpB1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.1)
C [auth E]	Metallophos	e6rcpE1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.1)
D [auth G]	Metallophos	e6rcpG1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.1)
E [auth H]	Metallophos	e6rcpH1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.1)
G [auth K]	Metallophos	e6rcpK1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.1)
H [auth L]	Metallophos	e6rcpL1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.1)
I [auth N]	Metallophos	e6rcpN1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.1)
J [auth O]	Metallophos	e6rcpO1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.1)
K [auth P]	Metallophos	e6rcpP1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.1)
L [auth Q]	Metallophos	e6rcpQ1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.1)
M [auth R]	Metallophos	e6rcpR1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.1)
N [auth F]	Metallophos	e6rcpF1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.1)
Q [auth M]	Metallophos	e6rcpM1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.1)
R [auth C]	Metallophos	e6rcpC1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.1)
P [auth J]	Metallophos	e6rcpJ1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.1)
O [auth D]	Metallophos	e6rcpD1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.1)
F [auth I]	Metallophos	e6rcpI1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Metallophos	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)
B	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)
C [auth E]	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)
D [auth G]	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)
E [auth H]	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)
G [auth K]	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)
H [auth L]	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)
I [auth N]	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)
J [auth O]	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)
K [auth P]	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)
L [auth Q]	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)
M [auth R]	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)
N [auth F]	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)
Q [auth M]	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)
R [auth C]	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)
P [auth J]	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)
O [auth D]	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)
F [auth I]	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C [auth E], D [auth G], E [auth H], A, B, C [auth E], D [auth G], E [auth H], F [auth I], G [auth K], H [auth L], I [auth N], J [auth O], K [auth P], L [auth Q], M [auth R], N [auth F], O [auth D], P [auth J], Q [auth M], R [auth C]	OmpK36	wide pore channel activity passive transmembrane transporter activity channel activity porin activity transporter activity transmembrane transporter activity	transmembrane transport localization transport monoatomic ion transmembrane transport monoatomic ion transport cellular process establishment of localization	protein-containing complex cellular anatomical structure membrane pore complex membrane protein complex cell periphery cell outer membrane external encapsulating structure cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C [auth E], D [auth G], E [auth H], A, B, C [auth E], D [auth G], E [auth H], F [auth I], G [auth K], H [auth L], I [auth N], J [auth O], K [auth P], L [auth Q], M [auth R], N [auth F], O [auth D], P [auth J], Q [auth M], R [auth C]	IPR050298	Gram-negative bacterial outer membrane porin	Family
A, B, C [auth E], D [auth G], E [auth H], A, B, C [auth E], D [auth G], E [auth H], F [auth I], G [auth K], H [auth L], I [auth N], J [auth O], K [auth P], L [auth Q], M [auth R], N [auth F], O [auth D], P [auth J], Q [auth M], R [auth C]	IPR023614	Porin domain superfamily	Homologous Superfamily
A, B, C [auth E], D [auth G], E [auth H], A, B, C [auth E], D [auth G], E [auth H], F [auth I], G [auth K], H [auth L], I [auth N], J [auth O], K [auth P], L [auth Q], M [auth R], N [auth F], O [auth D], P [auth J], Q [auth M], R [auth C]	IPR001702	Porin, Gram-negative type	Family
A, B, C [auth E], D [auth G], E [auth H], A, B, C [auth E], D [auth G], E [auth H], F [auth I], G [auth K], H [auth L], I [auth N], J [auth O], K [auth P], L [auth Q], M [auth R], N [auth F], O [auth D], P [auth J], Q [auth M], R [auth C]	IPR013793	Porin, Gram-negative type, conserved site	Conserved Site
A, B, C [auth E], D [auth G], E [auth H], A, B, C [auth E], D [auth G], E [auth H], F [auth I], G [auth K], H [auth L], I [auth N], J [auth O], K [auth P], L [auth Q], M [auth R], N [auth F], O [auth D], P [auth J], Q [auth M], R [auth C]	IPR001897	Porin, gammaproteobacterial	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C [auth E], D [auth G], E [auth H] A, B, C [auth E], D [auth G], E [auth H], F [auth I], G [auth K], H [auth L], I [auth N], J [auth O], K [auth P], L [auth Q], M [auth R], N [auth F], O [auth D], P [auth J], Q [auth M], R [auth C]	OPM	Transmembrane	Beta-barrel transmembrane	Trimeric porins (n=16,S=20)	General Bacterial Porin (GBP)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C [auth E], D [auth G], E [auth H] A, B, C [auth E], D [auth G], E [auth H], F [auth I], G [auth K], H [auth L], I [auth N], J [auth O], K [auth P], L [auth Q], M [auth R], N [auth F], O [auth D], P [auth J], Q [auth M], R [auth C]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C [auth E], D [auth G], E [auth H] A, B, C [auth E], D [auth G], E [auth H], F [auth I], G [auth K], H [auth L], I [auth N], J [auth O], K [auth P], L [auth Q], M [auth R], N [auth F], O [auth D], P [auth J], Q [auth M], R [auth C]	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Beta-Barrel Membrane Proteins: Porins and Relatives	OmpK36 osmoporin, wild-type

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.