6SGD | pdb_00006sgd

Nek2 kinase covalently bound to 2-arylamino-6-ethynylpurine inhibitor 24

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6sgda1	Alpha and beta proteins (a+b)	Protein kinase-like (PK-like)	Protein kinase-like (PK-like)	Protein kinases, catalytic subunit	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d6sgda2	Artifacts	Tags	Tags	Tags	C-terminal Tags	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Protein kinase-like (PK-like)	8043107	3000066	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Beta-lactamase	e6sgdA1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: Beta-lactamase	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00069	Protein kinase domain (Pkinase)	Protein kinase domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Serine/threonine-protein kinase Nek2	catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity protein serine kinase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein phosphatase binding phosphatase binding protein binding binding enzyme binding adenyl ribonucleotide binding catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity protein serine kinase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein phosphatase binding phosphatase binding protein binding binding enzyme binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein serine/threonine kinase activity cation binding metal ion binding	cellular process cell cycle mitotic cell cycle microtubule organizing center organization centrosome separation microtubule cytoskeleton organization cellular component organization organelle organization centrosome cycle microtubule-based process cellular component organization or biogenesis cytoskeleton organization cell cycle process regulation of cellular process cellular process cell cycle mitotic cell cycle microtubule organizing center organization centrosome separation microtubule cytoskeleton organization cellular component organization organelle organization centrosome cycle microtubule-based process cellular component organization or biogenesis cytoskeleton organization cell cycle process regulation of cellular process negative regulation of biological process negative regulation of cell cycle centriole-centriole cohesion negative regulation of cellular process regulation of cell cycle regulation of biological process regulation of cell cycle process biological regulation negative regulation of cell cycle process negative regulation of centriole-centriole cohesion regulation of centriole-centriole cohesion cell division chromosome segregation organelle assembly membraneless organelle assembly spindle assembly cellular component biogenesis cellular component assembly spindle organization mitotic nuclear division regulation of cellular component organization organelle fission regulation of mitotic nuclear division regulation of organelle organization regulation of mitotic cell cycle nuclear division mitotic cell cycle process regulation of nuclear division mitotic sister chromatid segregation microtubule cytoskeleton organization involved in mitosis chromosome organization sister chromatid segregation mitotic spindle organization mitotic spindle assembly nuclear chromosome segregation positive regulation of organelle organization regulation of telomere maintenance positive regulation of cellular component organization positive regulation of biological process telomere organization regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process positive regulation of telomere maintenance primary metabolic process regulation of chromosome organization regulation of macromolecule metabolic process DNA metabolic process nucleic acid metabolic process positive regulation of chromosome organization telomere maintenance positive regulation of DNA metabolic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of DNA metabolic process mitotic centrosome separation regulation of mitotic centrosome separation sexual reproduction reproductive process meiotic cell cycle developmental process multicellular organism development multicellular organismal process embryo development ending in birth or egg hatching chordate embryonic development anatomical structure development embryo development in utero embryonic development blastocyst development attachment of spindle microtubules to kinetochore metaphase chromosome alignment localization chromosome localization organelle localization regulation of attachment of spindle microtubules to kinetochore	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection midbody intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection midbody intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle organelle lumen membraneless organelle nuclear lumen cytoskeleton spindle spindle pole microtubule cytoskeleton condensed nuclear chromosome nuclear chromosome chromosome condensed chromosome centrosome microtubule organizing center cytoplasm cytosol cell periphery plasma membrane membrane nucleoplasm protein-containing complex intercellular bridge chromosomal region kinetochore chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex ciliary basal body polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000719	Protein kinase domain	Domain
A	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A	IPR051131	NEK Ser/Thr protein kinase family, NIMA subfamily	Family
A	IPR008271	Serine/threonine-protein kinase, active site	Active Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P51955	retinitis pigmentosa retinitis pigmentosa 67 non-small cell lung carcinoma malignant pancreatic neoplasm Neoplasm Invasiveness ovarian cancer pilocytic astrocytoma retinal degeneration adrenal cortex carcinoma Sjogren syndrome atypical teratoid rhabdoid tumor cone-rod dystrophy esophageal adenocarcinoma invasive ductal breast carcinoma lung cancer retinitis pigmentosa retinitis pigmentosa 67 non-small cell lung carcinoma malignant pancreatic neoplasm Neoplasm Invasiveness ovarian cancer pilocytic astrocytoma retinal degeneration adrenal cortex carcinoma Sjogren syndrome atypical teratoid rhabdoid tumor cone-rod dystrophy esophageal adenocarcinoma invasive ductal breast carcinoma lung cancer malignant glioma medulloblastoma pancreatic intraductal papillary-mucinous carcinoma primitive neuroectodermal tumor astrocytic tumor breast cancer ductal breast carcinoma in situ glioblastoma large cell medulloblastoma malignant colon neoplasm malignant mesothelioma nasopharyngeal carcinoma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm psoriasis atopic eczema breast carcinoma endometriosis hepatocellular carcinoma lung adenocarcinoma malignant ependymoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.