6SUP
Crystal Structure of TcdB2-TccC3-Cdc42
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF03534 | e6supA4 | A: beta meanders | X: Rearrangement hotspot (RHS) repeats protein (From Topology) | H: Rearrangement hotspot (RHS) repeats protein (From Topology) | T: Rearrangement hotspot (RHS) repeats protein | F: PF03534 | ECOD (1.6) |
A | PF12255,PF12256 | e6supA1 | A: beta meanders | X: Rearrangement hotspot (RHS) repeats protein (From Topology) | H: Rearrangement hotspot (RHS) repeats protein (From Topology) | T: Rearrangement hotspot (RHS) repeats protein | F: PF12255,PF12256 | ECOD (1.6) |
A | PF18807 | e6supA2 | A: beta meanders | X: Rearrangement hotspot (RHS) repeats protein (From Topology) | H: Rearrangement hotspot (RHS) repeats protein (From Topology) | T: Rearrangement hotspot (RHS) repeats protein | F: PF18807 | ECOD (1.6) |
A | PF12256 | e6supA3 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: Propeller domain in ABC toxin B component | F: PF12256 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF18807 | Tripartite Tc toxins repeat (TTc_toxin_rep) | Tripartite Tc toxins repeat | - | Family | |
PF12256 | Insecticide toxin TcdB middle/N-terminal region (TcdB_toxin_midN) | Insecticide toxin TcdB middle/N-terminal region | - | Repeat | |
PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain | |
PF12255 | Insecticide toxin TcdB middle/C-terminal region (TcdB_toxin_midC) | Insecticide toxin TcdB middle/C-terminal region | - | Family | |
PF03534 | Salmonella virulence plasmid 65kDa B protein (SpvB) | Salmonella virulence plasmid 65kDa B protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR028994 | Integrin alpha, N-terminal | Homologous Superfamily | |
IPR003284 | Salmonella virulence plasmid 65kDa B protein | Family | |
IPR022044 | Insecticide toxin TcdB middle/C-terminal | Domain | |
IPR022045 | Insecticide toxin TcdB middle/N-terminal | Domain | |
IPR041508 | Toxin complex C-like repeat | Repeat | |
IPR022385 | Rhs repeat-associated core | Domain | |
IPR001806 | Small GTPase | Family | |
IPR003578 | Small GTPase Rho | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR037874 | Cdc42 | Family | |
IPR005225 | Small GTP-binding protein domain | Domain |