6T9E
Crystal structure of a bispecific DutaFab in complex with human PDGF
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth CCC] | SCOP2B Superfamily | Cystine-knot cytokines | 8038746 | 3000846 | SCOP2B (2022-06-29) |
D [auth DDD] | SCOP2B Superfamily | Cystine-knot cytokines | 8038746 | 3000846 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth AAA] | PF07654 | e6t9eAAA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
A [auth AAA] | PF07686 | e6t9eAAA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
E [auth HHH] | PF07654 | e6t9eHHH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
E [auth HHH] | PF07686 | e6t9eHHH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
B [auth BBB] | PF07654 | e6t9eBBB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
B [auth BBB] | PF07686 | e6t9eBBB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
F [auth LLL] | PF07654 | e6t9eLLL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07654 | ECOD (1.6) |
F [auth LLL] | PF07686 | e6t9eLLL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C [auth CCC] | PF00341 | e6t9eCCC1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: PF00341 | ECOD (1.6) |
D [auth DDD] | PF00341 | e6t9eDDD1 | A: few secondary structure elements | X: Cystine-knot cytokines (From Topology) | H: Cystine-knot cytokines (From Topology) | T: Cystine-knot cytokines | F: PF00341 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth CCC], D [auth DDD] | PF04692 | Platelet-derived growth factor, N terminal region (PDGF_N) | Platelet-derived growth factor, N terminal region | - | Family |
C [auth CCC], D [auth DDD] | PF00341 | PDGF/VEGF domain (PDGF) | PDGF/VEGF domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth CCC], D [auth DDD] | IPR029034 | Cystine-knot cytokine | Homologous Superfamily |
C [auth CCC], D [auth DDD] | IPR006782 | Platelet-derived growth factor, N-terminal | Domain |
C [auth CCC], D [auth DDD] | IPR023581 | Platelet-derived growth factor, conserved site | Conserved Site |
C [auth CCC], D [auth DDD] | IPR000072 | PDGF/VEGF domain | Domain |