6U5F | pdb_00006u5f

CryoEM Structure of Pyocin R2 - precontracted - collar


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Z [auth n]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
Y [auth b]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
X [auth m]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
W [auth d]SCOP2 FamilyTail tube protein-like 8101742 4004578 SCOP2 (2022-06-29)
W [auth d]SCOP2 SuperfamilyT6SS-like 8101743 3000580 SCOP2 (2022-06-29)
V [auth e]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
U [auth 0]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
T [auth a]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
M [auth R]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
L [auth Q]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
KA [auth 5]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
K [auth P]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
JA [auth r]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
J [auth O]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
IA [auth f]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
I [auth N]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
HA [auth 4]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
GA [auth q]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
FA [auth 3]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
EA [auth p]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
DA [auth 2]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
CA [auth o]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
C [auth M]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
BA [auth c]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
AA [auth 1]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Z [auth n]G-alphae6u5fn1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
Y [auth b]G-alphae6u5fb1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
X [auth m]G-alphae6u5fm1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
W [auth d]G-alphae6u5fd1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
V [auth e]G-alphae6u5fe1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
U [auth 0]KWL1e6u5f01 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: KWL1ECOD (develop294)
T [auth a]G-alphae6u5fa1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
M [auth R]G-alphae6u5fR1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
L [auth Q]G-alphae6u5fQ1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
KA [auth 5]G-alphae6u5f51 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
K [auth P]G-alphae6u5fP1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
JA [auth r]G-alphae6u5fr1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
J [auth O]G-alphae6u5fO1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
IA [auth f]G-alphae6u5ff1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
I [auth N]G-alphae6u5fN1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
HA [auth 4]G-alphae6u5f41 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
GA [auth q]G-alphae6u5fq1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
FA [auth 3]G-alphae6u5f31 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
EA [auth p]G-alphae6u5fp1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
DA [auth 2]G-alphae6u5f21 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
CA [auth o]G-alphae6u5fo1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
C [auth M]G-alphae6u5fM1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
BA [auth c]G-alphae6u5fc1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
AA [auth 1]G-alphae6u5f11 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
ZA [auth X]G-alphae6u5fX1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
YA [auth w]G-alphae6u5fw1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
XA [auth k]G-alphae6u5fk1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
WA [auth W]G-alphae6u5fW1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
VA [auth v]G-alphae6u5fv1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
UA [auth j]G-alphae6u5fj1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
TA [auth V]G-alphae6u5fV1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
SA [auth u]G-alphae6u5fu1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
SG-alphae6u5fS1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
RA [auth i]G-alphae6u5fi1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
QA [auth U]G-alphae6u5fU1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
PA [auth t]G-alphae6u5ft1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
OA [auth h]G-alphae6u5fh1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
NA [auth T]G-alphae6u5fT1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
MA [auth s]G-alphae6u5fs1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
LA [auth g]G-alphae6u5fg1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
H [auth L]G-alphae6u5fL1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
G [auth K]G-alphae6u5fK1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
F [auth J]G-alphae6u5fJ1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
E [auth I]G-alphae6u5fI1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
D [auth H]G-alphae6u5fH1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
BB [auth x]G-alphae6u5fx1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
B [auth G]G-alphae6u5fG1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)
AB [auth l]G-alphae6u5fl1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: G-alphaECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF04985Phage tail tube protein FII (Phage_tube)Phage tail tube protein FII- Family
PF17482Phage tail sheath C-terminal domain (Phage_sheath_1C)Phage tail sheath C-terminal domainThis entry represents the C-terminal domain in a variety of phage tail sheath proteins [4]. Domain
PF22671Tail sheath protein Gp18 domain III N-terminal region (Gp18_domIII_N)Tail sheath protein Gp18 domain III N-terminal regionThis entry represents the N-terminal segment of domain III from the phage tail sheath protein Gp18 y similar sequences [1-5]. Domain III is completed by Pfam:PF04984 with an overall structure consisting of a beta-sheet with five parallel and one anti ...This entry represents the N-terminal segment of domain III from the phage tail sheath protein Gp18 y similar sequences [1-5]. Domain III is completed by Pfam:PF04984 with an overall structure consisting of a beta-sheet with five parallel and one anti-parallel beta-strands plus six alpha-helices, which surround the beta-sheet.
Domain
PF04984Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)Phage tail sheath protein subtilisin-like domainThis entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure. Domain
PF04985Phage tail tube protein FII (Phage_tube)Phage tail tube protein FII- Family

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR052042Tail sheath structural proteinFamily
IPR006498Tail tube proteinFamily
IPR052042Tail sheath structural proteinFamily
IPR020287Tail sheath protein, C-terminal domainDomain
IPR054564Tail sheath protein Gp18-like, domain III N-terminal regionDomain
IPR035089Tail sheath protein, subtilisin-like domainDomain