Annotations: 6U8Z

Crystal Structure of Catalytic Domain of Human Phospholipase D1

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF13091	Cardiolipin synthase, PLD-like domain (PLDc_2)	Cardiolipin synthase, PLD-like domain	This is a PLD-like domain mainly found in Cardiolipin synthases. These enzymes catalyse the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol [1]. M ...	This is a PLD-like domain mainly found in Cardiolipin synthases. These enzymes catalyse the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol [1]. Mitochondrial cardiolipin hydrolase (PLD6) from mammals has phospholipase and nuclease activities, depending on the different physiological conditions [2] and it plays a key role in mitochondrial fusion and fission via its phospholipase activity [3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Phospholipase D1,Phospholipase D1	ion binding binding anion binding phosphatidylinositol binding small molecule binding phosphoric ester hydrolase activity phospholipase activity hydrolase activity, acting on ester bonds phosphoric diester hydrolase activity glycerophospholipase activity hydrolase activity catalytic activity D-type glycerophospholipase activity lipase activity	cellular response to stimulus cellular response to nutrient levels response to nutrient levels cellular response to chemical stimulus response to stimulus response to chemical response to nutrient cellular response to nutrient cellular process phosphatidic acid biosynthetic process glycerophospholipid biosynthetic process phosphatidic acid metabolic process glycerophospholipid metabolic process lipid biosynthetic process cellular response to stimulus cellular response to nutrient levels response to nutrient levels cellular response to chemical stimulus response to stimulus response to chemical response to nutrient cellular response to nutrient cellular process phosphatidic acid biosynthetic process glycerophospholipid biosynthetic process phosphatidic acid metabolic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phospholipid biosynthetic process phospholipid metabolic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process glycerolipid metabolic process metabolic process phosphorus metabolic process lipid metabolic process lipid catabolic process catabolic process phospholipid catabolic process organophosphate catabolic process regulation of biological process small GTPase-mediated signal transduction regulation of cellular process signaling Ras protein signal transduction biological regulation intracellular signal transduction cell communication intracellular signaling cassette signal transduction regulation of localization regulation of transport transport regulation of vesicle-mediated transport establishment of localization vesicle-mediated transport localization chemotaxis taxis response to external stimulus locomotion positive regulation of protein metabolic process positive regulation of biological process positive regulation of translation protein biosynthetic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process protein metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of protein metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of gene expression positive regulation of gene expression regulation of translation regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process cellular localization regulation of synaptic vesicle cycle synaptic vesicle cycle vesicle-mediated transport in synapse establishment of localization in cell	membrane-bounded organelle intracellular anatomical structure tertiary granule membrane membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system tertiary granule intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle membrane-bounded organelle intracellular anatomical structure tertiary granule membrane membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system tertiary granule intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle organelle membrane secretory granule membrane specific granule membrane specific granule cell periphery apical part of cell plasma membrane plasma membrane region apical plasma membrane endocytic vesicle endosome membrane endosome late endosome membrane late endosome cholinergic synapse synapse cell junction lytic vacuole vacuole lysosome organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane vacuolar membrane lytic vacuole membrane lysosomal membrane Golgi apparatus Golgi membrane perinuclear region of cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001849	Pleckstrin homology domain	Domain
A	IPR001683	Phox homology	Domain
A	IPR001736	Phospholipase D/Transphosphatidylase	Domain
A	IPR011993	PH-like domain superfamily	Homologous Superfamily
A	IPR016555	Phospholipase D, eukaryotic type	Family
A	IPR015679	Phospholipase D family	Family
A	IPR036871	PX domain superfamily	Homologous Superfamily
A	IPR025202	Cardiolipin synthase-like, phospholipase D-like domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: Q13393	cardiac valvular defect, developmental middle cerebral artery infarction Cardiomegaly non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia pterygium Sjogren syndrome adrenal cortex carcinoma tuberculosis cystic fibrosis malignant ependymoma oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma pituitary cancer cardiac valvular defect, developmental middle cerebral artery infarction Cardiomegaly non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia pterygium Sjogren syndrome adrenal cortex carcinoma tuberculosis cystic fibrosis malignant ependymoma oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma pituitary cancer spina bifida breast cancer ulcerative colitis lung cancer malignant pancreatic neoplasm osteosarcoma pancreatic intraductal papillary-mucinous neoplasm progressive supranuclear palsy sinusitis breast carcinoma esophageal adenocarcinoma malignant colon neoplasm medulloblastoma

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Monotopic/peripheral	Alpha + Beta monotopic/peripheral	Phospholipase D-like	Phospholipase D

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.