6UJC
Integrin alpha-v beta-8 in complex with the Fabs C6-RGD3 and 11D12v2
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Integrin_alpha2_1st | e6ujcA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Integrin_alpha2_1st | ECOD (1.6) |
A | FG-GAP_1st | e6ujcA2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: FG-GAP_1st | ECOD (1.6) |
B | INB | e6ujcB2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: INB | ECOD (1.6) |
B | Integrin_beta | e6ujcB1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: vWA-like | F: Integrin_beta | ECOD (1.6) |
C [auth E] | V-set_8 | e6ujcE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
D [auth F] | V-set | e6ujcF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.130.10.130 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (utative) |
A | 2.60.40.1460 | Mainly Beta | Sandwich | Immunoglobulin-like | Integrin domains. Chain A, domain 2 | CATH (utative) |
B | 3.40.50.410 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | von Willebrand factor, type A domain | CATH (utative) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
House mouse-human | null | Mus musculus (house mouse) | - | - | IG | (VH-CH1) | IMGT (202442-0) | |
C [auth E] | - | VH-CH1 | - | IGHV9-2-1*01, IGHJ2*01, IGHG2A*01, IGHG2A*02 | V-DOMAIN VH, C-DOMAIN CH1 | IG | (L-KAPPA) | IMGT (202442-0) |
D [auth F] | - | L-KAPPA | - | IGKV8-21*01, IGKJ5*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | (L-KAPPA) | IMGT (202442-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
C [auth E] | Heavy Chain | IGHV9 | - | integrin beta-8 | integrin alpha-v | SAbDab (2024-10-25) |
D [auth F] | Light Chain | IGKV8 | Kappa | integrin beta-8 | integrin alpha-v | SAbDab (2024-10-25) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01839 | FG-GAP repeat (FG-GAP) | FG-GAP repeat | - | Repeat | |
PF08441 | Integrin alpha Ig-like domain 1 (Integrin_A_Ig_1) | Integrin alpha Ig-like domain 1 | This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of Pfam:PF01839 repeats and to the N-terminus of the Pfam:PF00357 cytoplasmic region. This region is composed of an immunoglobulin-like domain. | Domain | |
PF00362 | Integrin beta chain VWA domain (Integrin_beta) | Integrin beta chain VWA domain | Integrins have been found in animals and their homologues have also been found in cyanobacteria, probably due to horizontal gene transfer [1]. This domain corresponds to the integrin beta VWA domain. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013517 | FG-GAP repeat | Repeat | |
IPR048286 | Integrin alpha, third immunoglobulin-like domain | Domain | |
IPR013649 | Integrin alpha, first immunoglubulin-like domain | Domain | |
IPR048285 | Integrin alpha, second immunoglobulin-like domain | Domain | |
IPR032695 | Integrin domain superfamily | Homologous Superfamily | |
IPR013519 | Integrin alpha beta-propellor | Repeat | |
IPR000413 | Integrin alpha chain | Family | |
IPR028994 | Integrin alpha, N-terminal | Homologous Superfamily | |
IPR018184 | Integrin alpha chain, C-terminal cytoplasmic region, conserved site | Conserved Site | |
IPR033760 | Integrin beta N-terminal | Domain | |
IPR013111 | EGF-like domain, extracellular | Domain | |
IPR015812 | Integrin beta subunit | Family | |
IPR002369 | Integrin beta subunit, VWA domain | Domain | |
IPR016201 | PSI domain | Domain | |
IPR000742 | EGF-like domain | Domain | |
IPR036465 | von Willebrand factor A-like domain superfamily | Homologous Superfamily | |
IPR032695 | Integrin domain superfamily | Homologous Superfamily |