6VBV | pdb_00006vbv

Structure of the bovine BBSome:ARL6:GTP complex


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth 3]Rase6vbv31 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: RasECOD (1.6)
D [auth 4]TPR_15e6vbv41 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_15ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
I [auth 3]3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
G [auth 8]PF13181Tetratricopeptide repeat (TPR_8)Tetratricopeptide repeat- Repeat
G [auth 8]PF13424Tetratricopeptide repeat (TPR_12)Tetratricopeptide repeat- Repeat
H [auth 9]PF23339PTHB1 C-terminal helix bundle (PTHB1_CtH)PTHB1 C-terminal helix bundleThis entry represents the C-terminal helix bundle (CtH) found in PTHB1 protein (also known as Bardet-Biedl syndrome 9 protein, BBS9). This protein forms a part of the BBSome complex, which is required for ciliogenesis [1]. PTHB1 is the major binding ...This entry represents the C-terminal helix bundle (CtH) found in PTHB1 protein (also known as Bardet-Biedl syndrome 9 protein, BBS9). This protein forms a part of the BBSome complex, which is required for ciliogenesis [1]. PTHB1 is the major binding subunit of IFT38 C-terminal domain, which assists the BBSome in some of its roles [1].
Domain
H [auth 9]PF23337PTHB1 platform domain (PTHB1_pf)PTHB1 platform domainThis entry represents the platform domain of PTHB1 protein (also known as Bardet-Biedl syndrome 9 protein, BBS9). This protein forms a part of the BBSome complex, which is required for ciliogenesis [1]. PTHB1 is the major binding subunit of IFT38 C-t ...This entry represents the platform domain of PTHB1 protein (also known as Bardet-Biedl syndrome 9 protein, BBS9). This protein forms a part of the BBSome complex, which is required for ciliogenesis [1]. PTHB1 is the major binding subunit of IFT38 C-terminal domain, which assists the BBSome in some of its roles [1].
Domain
H [auth 9]PF23338PTHB1 hairpin (PTHB1_hp)PTHB1 hairpinThis entry represents a hairpin domain found in PTHB1 protein (also known as Bardet-Biedl syndrome 9 protein, BBS9). This protein forms a part of the BBSome complex, which is required for ciliogenesis [1]. PTHB1 is the major binding subunit of IFT38 ...This entry represents a hairpin domain found in PTHB1 protein (also known as Bardet-Biedl syndrome 9 protein, BBS9). This protein forms a part of the BBSome complex, which is required for ciliogenesis [1]. PTHB1 is the major binding subunit of IFT38 C-terminal domain, which assists the BBSome in some of its roles [1].
Domain
F [auth 7]PF23743BBS7 beta-propeller (Beta-prop_BBS7)BBS7 beta-propeller- Repeat
F [auth 7]PF23360BBS7 GAE domain (BBS7_GAE)BBS7 GAE domainThis entry represents the gamma-adaptin ear (GAE) domain of BBS7. BBS7 is one of the BBS proteins that form the BBSome complex found in vertebrates and nematodes, including humans, mice, and Caenorhabditis elegans. The BBSome complex is required for ...This entry represents the gamma-adaptin ear (GAE) domain of BBS7. BBS7 is one of the BBS proteins that form the BBSome complex found in vertebrates and nematodes, including humans, mice, and Caenorhabditis elegans. The BBSome complex is required for ciliogenesis, as well as the assembly and movement of intraflagellar transport proteins along the ciliary membrane [1-3].
Domain
F [auth 7]PF23361BBS7 platform domain (BBS7_pf)BBS7 platform domainThis entry represents the platform domain of BBS7. BBS7 is one of the BBS proteins that form the BBSome complex found in vertebrates and nematodes, including humans, mice, and Caenorhabditis elegans. BBSome complex is required for ciliogenesis and th ...This entry represents the platform domain of BBS7. BBS7 is one of the BBS proteins that form the BBSome complex found in vertebrates and nematodes, including humans, mice, and Caenorhabditis elegans. BBSome complex is required for ciliogenesis and the assembly and movement of intraflagellar transport proteins along the ciliary membrane [1-3].
Domain
F [auth 7]PF23349BBS7 hairpin (BBS7_hp)BBS7 hairpinThis entry represents a hairpin domain found at the C-terminal of Bardet-Biedl syndrome 7 (BBS7) proteins from animals. This protein forms a part of the BBSome complex, which is required for ciliogenesis [1]. BBS7 is the BBSome subunit responsible fo ...This entry represents a hairpin domain found at the C-terminal of Bardet-Biedl syndrome 7 (BBS7) proteins from animals. This protein forms a part of the BBSome complex, which is required for ciliogenesis [1]. BBS7 is the BBSome subunit responsible for the binding to SMO H8 [1].
Domain
D [auth 4]PF14559Tetratricopeptide repeat (TPR_19)Tetratricopeptide repeat- Repeat
D [auth 4]PF13181Tetratricopeptide repeat (TPR_8)Tetratricopeptide repeat- Repeat
D [auth 4]PF13414TPR repeat (TPR_11)TPR repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G [auth 8]Tetratricopeptide repeat domain 8
I [auth 3]ADP-ribosylation factor-like protein 6
H [auth 9]Bardet-Biedl syndrome 9-
F [auth 7]Bardet-Biedl syndrome 7 protein homolog-
E [auth 5]Bardet-Biedl syndrome 5 protein homolog
D [auth 4]Bardet-Biedl syndrome 4 protein homolog
C [auth 2]Bardet-Biedl syndrome 2 protein homolog-
B [auth 1]BBS1 domain-containing protein---
A [auth 0]Bardet-Biedl syndrome 18 protein-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
G [auth 8]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
G [auth 8]IPR019734Tetratricopeptide repeatRepeat
G [auth 8]IPR028796Tetratricopeptide repeat protein 8Family
I [auth 3]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
I [auth 3]IPR041839ADP-ribosylation factor-like protein 6Family
I [auth 3]IPR005225Small GTP-binding domainDomain
I [auth 3]IPR024156Small GTPase superfamily, ARF typeFamily
I [auth 3]IPR006689Small GTPase superfamily, ARF/SAR typeFamily
H [auth 9]IPR026511Parathyroid hormone-responsive B1Family
H [auth 9]IPR055364PTHB1, C-terminal helix bundle domainDomain
H [auth 9]IPR055362PTHB1, platform domainDomain
H [auth 9]IPR028074PTHB1, GAE domainDomain
H [auth 9]IPR028073PTHB1, N-terminal domainDomain
H [auth 9]IPR055363PTHB1, hairpin domainDomain
F [auth 7]IPR056332BBS7, beta-propellerDomain
F [auth 7]IPR056334BBS7, GAE domainDomain
F [auth 7]IPR056333BBS7, platform domainDomain
F [auth 7]IPR016575Bardet-Biedl syndrome 7 proteinFamily
F [auth 7]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
F [auth 7]IPR056335BBS7, helical hairpinDomain
F [auth 7]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
E [auth 5]IPR030804BBSome complex member BBS5/sex-determination protein fem-3Family
E [auth 5]IPR011993PH-like domain superfamilyHomologous Superfamily
E [auth 5]IPR014003BBSome complex member BBS5, PH domainDomain
E [auth 5]IPR006606BBSome complex member BBS5Family
D [auth 4]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
D [auth 4]IPR019734Tetratricopeptide repeatRepeat
C [auth 2]IPR055381BBS2, C-terminal helix bundle domainDomain
C [auth 2]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
C [auth 2]IPR029429Ciliary BBSome complex subunit 2, middle regionDomain
C [auth 2]IPR055380BBS2, hairpin domainDomain
C [auth 2]IPR016616Bardet-Biedl syndrome 2 proteinFamily
C [auth 2]IPR029430Ciliary BBSome complex subunit 2, N-terminalDomain
C [auth 2]IPR029333BBS2, GAE domainDomain
C [auth 2]IPR055379BBS2, platform domainDomain
A [auth 0]IPR028233Cilia BBSome complex subunit 10Family