6VG8

Crystal structure of the DNA binding domains of human FLI1 and Runx2 in complex with 16-mer DNA CAGAGGATGTGGCTTC

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Winged helix DNA-binding domain	8003108	3000034	SCOP2B (2022-06-29)
D	SCOP2 Family	RUNT domain	8102163	4001855	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	p53-like transcription factors	8102164	3000758	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Ets	e6vg8A1	A: alpha arrays	X: HTH	H: HTH	T: winged	F: Ets	ECOD (1.6)
D	Runt	e6vg8D1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: Runt	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00178	Ets-domain (Ets)	Ets-domain	-	Domain
D	PF00853	Runt domain (Runt)	Runt domain	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Friend leukemia integration 1 transcription factor	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding organic cyclic compound binding nucleic acid binding transcription regulatory region nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding protein-containing complex binding chromatin binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding organic cyclic compound binding nucleic acid binding transcription regulatory region nucleic acid binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding RNA polymerase II cis-regulatory region sequence-specific DNA binding protein-containing complex binding chromatin binding transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity	regulation of body fluid levels hemostasis biological regulation regulation of biological quality developmental process cellular developmental process hemopoiesis megakaryocyte differentiation cell development myeloid cell differentiation cell differentiation megakaryocyte development anatomical structure development myeloid cell development regulation of body fluid levels hemostasis biological regulation regulation of biological quality developmental process cellular developmental process hemopoiesis megakaryocyte differentiation cell development myeloid cell differentiation cell differentiation megakaryocyte development anatomical structure development myeloid cell development cellular process anatomical structure morphogenesis animal organ development animal organ morphogenesis regulation of cellular process positive regulation of DNA-templated transcription cellular biosynthetic process positive regulation of biological process RNA metabolic process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process positive regulation of nucleobase-containing compound metabolic process cellular metabolic process primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process positive regulation of cellular biosynthetic process transcription by RNA polymerase II regulation of transcription by RNA polymerase II multicellular organismal process system process circulatory system process blood circulation	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen protein-containing complex protein-DNA complex intracellular non-membrane-bounded organelle chromatin chromosome non-membrane-bounded organelle nuclear body
B	DNA (5'-D(PCPAPGPAPGPGPAPTPGPTPGPGPCPTPTPC)-3')	-	-	-
C	DNA (5'-D(PGPAPAPGPCPCPAPCPAPTPCPCPTPCPTPG)-3')	-	-	-
D	Runt-related transcription factor 2	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding nucleic acid binding DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity transcription factor binding protein binding bHLH transcription factor binding DNA-binding transcription factor binding protein domain specific binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding protein-containing complex binding chromatin binding chromatin DNA binding	developmental process multicellular organismal process limb development appendage development embryonic forelimb morphogenesis embryonic limb morphogenesis embryonic morphogenesis embryonic appendage morphogenesis embryo development multicellular organism development anatomical structure morphogenesis forelimb morphogenesis appendage morphogenesis anatomical structure development developmental process multicellular organismal process limb development appendage development embryonic forelimb morphogenesis embryonic limb morphogenesis embryonic morphogenesis embryonic appendage morphogenesis embryo development multicellular organism development anatomical structure morphogenesis forelimb morphogenesis appendage morphogenesis anatomical structure development limb morphogenesis ossification bone mineralization animal organ development biomineral tissue development tissue development cellular developmental process connective tissue development cell development skeletal system development cell differentiation chondrocyte differentiation cellular process chondrocyte development cartilage development system development regulation of cellular process cellular biosynthetic process positive regulation of biological process positive regulation of cellular metabolic process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of biological process cellular metabolic process biological regulation regulation of cellular metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of cellular biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular biosynthetic process endochondral ossification replacement ossification endochondral bone morphogenesis skeletal system morphogenesis animal organ morphogenesis bone morphogenesis bone development hemopoiesis regulation of stem cell proliferation cell population proliferation positive regulation of cell population proliferation positive regulation of stem cell proliferation stem cell proliferation regulation of cell population proliferation cell activation mononuclear cell differentiation lymphocyte activation lymphocyte differentiation leukocyte activation T cell activation immune system process T cell differentiation leukocyte differentiation ligamentous ossification positive regulation of DNA-templated transcription RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II positive regulation of nucleobase-containing compound metabolic process primary metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription response to stimulus response to sodium phosphate response to chemical response to salt regulation of animal organ morphogenesis regulation of odontogenesis of dentin-containing tooth regulation of developmental process regulation of odontogenesis odontogenesis of dentin-containing tooth odontogenesis regulation of anatomical structure morphogenesis negative regulation of biological process negative regulation of cellular metabolic process negative regulation of RNA biosynthetic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA-templated transcription negative regulation of metabolic process negative regulation of cellular biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process osteoblast differentiation response to fibroblast growth factor cellular response to stimulus cellular response to growth factor stimulus signaling regulation of signal transduction cell surface receptor protein tyrosine kinase signaling pathway cell communication cellular response to endogenous stimulus signal transduction enzyme-linked receptor protein signaling pathway regulation of signaling cell surface receptor signaling pathway response to endogenous stimulus regulation of cellular response to growth factor stimulus regulation of response to stimulus fibroblast growth factor receptor signaling pathway regulation of cell communication response to growth factor cellular response to fibroblast growth factor stimulus regulation of fibroblast growth factor receptor signaling pathway smoothened signaling pathway cellular response to BMP stimulus cell surface receptor protein serine/threonine kinase signaling pathway response to BMP transforming growth factor beta receptor superfamily signaling pathway BMP signaling pathway embryonic organ morphogenesis embryonic cranial skeleton morphogenesis chordate embryonic development embryo development ending in birth or egg hatching cranial skeletal system development embryonic skeletal system development embryonic organ development embryonic skeletal system morphogenesis osteoblast fate commitment cell fate commitment regulation of multicellular organismal process regulation of ossification regulation of cartilage development regulation of chondrocyte differentiation regulation of cell differentiation positive regulation of chondrocyte differentiation positive regulation of developmental process positive regulation of cell differentiation regulation of multicellular organismal development positive regulation of multicellular organismal process positive regulation of cartilage development positive regulation of epithelial cell proliferation regulation of epithelial cell proliferation epithelial cell proliferation nervous system development generation of neurons neurogenesis neuron differentiation negative regulation of signaling negative regulation of cell communication negative regulation of smoothened signaling pathway regulation of smoothened signaling pathway negative regulation of response to stimulus negative regulation of signal transduction osteoblast development anatomical structure maturation cell maturation developmental maturation intracellular signal transduction SMAD protein signal transduction intracellular signaling cassette regulation of osteoblast differentiation positive regulation of osteoblast differentiation stem cell differentiation	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol protein-containing complex transcription regulator complex intracellular organelle protein-DNA complex organelle intracellular non-membrane-bounded organelle chromatin chromosome non-membrane-bounded organelle membrane-bounded organelle intracellular anatomical structure cytoplasm cellular anatomical entity cytosol protein-containing complex transcription regulator complex intracellular organelle protein-DNA complex organelle intracellular non-membrane-bounded organelle chromatin chromosome non-membrane-bounded organelle membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR013761	Sterile alpha motif/pointed domain superfamily	Homologous Superfamily
A	IPR035573	Friend leukemia integration 1 transcription factor, pointed domain	Domain
A	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A	IPR000418	Ets domain	Domain
A	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A	IPR046328	ETS family	Family
A	IPR003118	Pointed domain	Domain
D	IPR012346	p53/RUNT-type transcription factor, DNA-binding domain superfamily	Homologous Superfamily
D	IPR013524	Runt domain	Domain
D	IPR016554	Runt-related transcription factor RUNX	Family
D	IPR008967	p53-like transcription factor, DNA-binding domain superfamily	Homologous Superfamily
D	IPR000040	Acute myeloid leukemia 1 protein (AML1)/Runt	Family
D	IPR027384	Runx, central domain superfamily	Homologous Superfamily
D	IPR013711	Runx, C-terminal domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q01543	Ewing sarcoma medulloblastoma bleeding disorder, platelet-type, 21 Jacobsen syndrome adult medulloblastoma medullomyoblastoma with myogenic differentiation melanotic medulloblastoma Paris-Trousseau thrombocytopenia childhood medulloblastoma Liver Cirrhosis, Experimental neoplasm of mature B-cells osteosarcoma pancreatic intraductal papillary-mucinous neoplasm peripheral primitive neuroectodermal tumor platelet storage pool deficiency Ewing sarcoma medulloblastoma bleeding disorder, platelet-type, 21 Jacobsen syndrome adult medulloblastoma medullomyoblastoma with myogenic differentiation melanotic medulloblastoma Paris-Trousseau thrombocytopenia childhood medulloblastoma Liver Cirrhosis, Experimental neoplasm of mature B-cells osteosarcoma pancreatic intraductal papillary-mucinous neoplasm peripheral primitive neuroectodermal tumor platelet storage pool deficiency cutaneous lupus erythematosus systemic lupus erythematosus vitiligo interstitial cystitis lung adenocarcinoma lymphoplasmacytic lymphoma nephrosclerosis ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia atrial fibrillation pilocytic astrocytoma cancer rheumatoid arthritis cystic fibrosis tuberculosis extraskeletal Ewing sarcoma lung cancer malignant mesothelioma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma B-cell chronic lymphocytic leukemia plasma cell myeloma Sjogren syndrome desmoplastic/nodular medulloblastoma ulcerative colitis Hermansky-Pudlak syndrome 1 lung carcinoma
D	Pharos: Q13950	cleidocranial dysplasia osteosarcoma rheumatoid arthritis osteoarthritis psoriatic arthritis osteochondrodysplasia Craniofacial Abnormalities uremia metaphyseal dysplasia-maxillary hypoplasia-brachydacty syndrome non-small cell lung carcinoma osteoarthritis susceptibility 1 adrenoleukodystrophy osteoporosis pancreatic ductal adenocarcinoma spondyloarthropathy cleidocranial dysplasia osteosarcoma rheumatoid arthritis osteoarthritis psoriatic arthritis osteochondrodysplasia Craniofacial Abnormalities uremia metaphyseal dysplasia-maxillary hypoplasia-brachydacty syndrome non-small cell lung carcinoma osteoarthritis susceptibility 1 adrenoleukodystrophy osteoporosis pancreatic ductal adenocarcinoma spondyloarthropathy ductal breast carcinoma in situ invasive ductal breast carcinoma malignant glioma medulloblastoma osteoarthritis, hip osteogenesis imperfecta B-cell chronic lymphocytic leukemia pilocytic astrocytoma sarcoidosis craniosynostosis glioblastoma tuberculosis lung adenocarcinoma malignant pancreatic neoplasm mucopolysaccharidosis type 4 osteonecrosis cancer ovarian cancer Crohn disease subependymal giant cell astrocytoma intellectual disability ulcerative colitis malignant ependymoma MALT lymphoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.