6VR8
Structure of a pseudomurein peptide ligase type E from Methanothermus fervidus
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth I] | Mur_ligase_M | e6vr8I1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Mur_ligase_M | ECOD (1.6) |
A [auth I] | LpxD | e6vr8I3 | A: a/b three-layered sandwiches | X: MurF and HprK N-domain-like (From Topology) | H: MurF and HprK N-domain-like (From Topology) | T: MurF and HprK N-domain-like | F: LpxD | ECOD (1.6) |
A [auth I] | Mur_ligase_C | e6vr8I2 | A: a/b three-layered sandwiches | X: MurD-like peptide ligases, peptide-binding domain (From Topology) | H: MurD-like peptide ligases, peptide-binding domain (From Topology) | T: MurD-like peptide ligases, peptide-binding domain | F: Mur_ligase_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth I] | 3.40.1190.10 | Alpha Beta | 3-Layer(aba) Sandwich | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | Mur-like, catalytic domain | CATH (utative) |
A [auth I] | 3.90.190.20 | Alpha Beta | Alpha-Beta Complex | Protein-Tyrosine Phosphatase | Chain A | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth I] | PF08245 | Mur ligase middle domain (Mur_ligase_M) | Mur ligase middle domain | Domain | |
A [auth I] | PF02875 | Mur ligase, glutamate ligase domain (Mur_ligase_C) | Mur ligase, glutamate ligase domain | This entry contains a number of related ligase enzymes which have EC numbers 6.3.2.* which includes: MurC (Swiss:P17952), MurD (Swiss:P14900), MurE (Swiss:P22188), MurF (Swiss:P11880), Mpl (Swiss:P37773) and FolC (Swiss:P08192). MurC, MurD, MurE and ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth I] | Mur ligase middle domain protein |
| - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth I] | IPR036615 | Mur ligase, C-terminal domain superfamily | Homologous Superfamily |
A [auth I] | IPR004101 | Mur ligase, C-terminal | Domain |
A [auth I] | IPR013221 | Mur ligase, central | Domain |
A [auth I] | IPR036565 | Mur-like, catalytic domain superfamily | Homologous Superfamily |