6VYP
Crystal structure of the LSD1/CoREST histone demethylase bound to its nucleosome substrate
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Core histone-like | 8041272 | 3001387 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Core histone-like | 8041272 | 3001387 | SCOP2B (2022-06-29) |
K [auth a] | SCOP2B Superfamily | Core histone-like | 8041272 | 3001387 | SCOP2B (2022-06-29) |
O [auth e] | SCOP2B Superfamily | Core histone-like | 8041272 | 3001387 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Core histone-like | 8042439 | 3001387 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Core histone-like | 8042439 | 3001387 | SCOP2B (2022-06-29) |
L [auth b] | SCOP2B Superfamily | Core histone-like | 8042439 | 3001387 | SCOP2B (2022-06-29) |
P [auth f] | SCOP2B Superfamily | Core histone-like | 8042439 | 3001387 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Core histone-like | 8041278 | 3001387 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Core histone-like | 8041278 | 3001387 | SCOP2B (2022-06-29) |
M [auth c] | SCOP2B Superfamily | Core histone-like | 8041278 | 3001387 | SCOP2B (2022-06-29) |
Q [auth g] | SCOP2B Superfamily | Core histone-like | 8041278 | 3001387 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Core histone-like | 8041279 | 3001387 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Core histone-like | 8041279 | 3001387 | SCOP2B (2022-06-29) |
N [auth d] | SCOP2B Superfamily | Core histone-like | 8041279 | 3001387 | SCOP2B (2022-06-29) |
R [auth h] | SCOP2B Superfamily | Core histone-like | 8041279 | 3001387 | SCOP2B (2022-06-29) |
S [auth M] | SCOP2B Superfamily | Flavoreductase-like | 8017500 | 3000055 | SCOP2B (2022-06-29) |
S [auth M] | SCOP2B Superfamily | LSD1 insert domain-like | 8056826 | 3002361 | SCOP2B (2022-06-29) |
S [auth M] | SCOP2B Superfamily | Flavoreductase-like | 8017500 | 3000055 | SCOP2B (2022-06-29) |
S [auth M] | SCOP2B Superfamily | Homeodomain-like | 8001517 | 3000001 | SCOP2B (2022-06-29) |
U [auth m] | SCOP2B Superfamily | Homeodomain-like | 8001517 | 3000001 | SCOP2B (2022-06-29) |
U [auth m] | SCOP2B Superfamily | LSD1 insert domain-like | 8056826 | 3002361 | SCOP2B (2022-06-29) |
U [auth m] | SCOP2B Superfamily | Flavoreductase-like | 8017500 | 3000055 | SCOP2B (2022-06-29) |
U [auth m] | SCOP2B Superfamily | Flavoreductase-like | 8017500 | 3000055 | SCOP2B (2022-06-29) |
W [auth K] | SCOP2B Superfamily | Homeodomain-like | 8001517 | 3000001 | SCOP2B (2022-06-29) |
W [auth K] | SCOP2B Superfamily | Flavoreductase-like | 8017500 | 3000055 | SCOP2B (2022-06-29) |
W [auth K] | SCOP2B Superfamily | Flavoreductase-like | 8017500 | 3000055 | SCOP2B (2022-06-29) |
W [auth K] | SCOP2B Superfamily | LSD1 insert domain-like | 8056826 | 3002361 | SCOP2B (2022-06-29) |
Y [auth k] | SCOP2B Superfamily | Flavoreductase-like | 8017500 | 3000055 | SCOP2B (2022-06-29) |
Y [auth k] | SCOP2B Superfamily | LSD1 insert domain-like | 8056826 | 3002361 | SCOP2B (2022-06-29) |
Y [auth k] | SCOP2B Superfamily | Flavoreductase-like | 8017500 | 3000055 | SCOP2B (2022-06-29) |
Y [auth k] | SCOP2B Superfamily | Homeodomain-like | 8001517 | 3000001 | SCOP2B (2022-06-29) |
T [auth N] | SCOP2B Superfamily | Homeodomain-like | 8044642 | 3000001 | SCOP2B (2022-06-29) |
T [auth N] | SCOP2B Superfamily | CoREST LSD1-binding region-like | 8056844 | 3002363 | SCOP2B (2022-06-29) |
V [auth n] | SCOP2B Superfamily | Homeodomain-like | 8044642 | 3000001 | SCOP2B (2022-06-29) |
V [auth n] | SCOP2B Superfamily | CoREST LSD1-binding region-like | 8056844 | 3002363 | SCOP2B (2022-06-29) |
X [auth L] | SCOP2B Superfamily | Homeodomain-like | 8044642 | 3000001 | SCOP2B (2022-06-29) |
X [auth L] | SCOP2B Superfamily | CoREST LSD1-binding region-like | 8056844 | 3002363 | SCOP2B (2022-06-29) |
Z [auth l] | SCOP2B Superfamily | Homeodomain-like | 8044642 | 3000001 | SCOP2B (2022-06-29) |
Z [auth l] | SCOP2B Superfamily | CoREST LSD1-binding region-like | 8056844 | 3002363 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Histone | e6vypA1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
E | Histone | e6vypE1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
K [auth a] | Histone | e6vypa1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
O [auth e] | Histone | e6vype1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
B | Histone_1 | e6vypB1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
F | Histone_1 | e6vypF1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
L [auth b] | Histone_1 | e6vypb1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
P [auth f] | Histone_1 | e6vypf1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
C | Histone_1 | e6vypC1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
G | Histone_1 | e6vypG1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
M [auth c] | Histone_1 | e6vypc1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
Q [auth g] | Histone_1 | e6vypg1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone_1 | ECOD (1.6) |
D | Histone | e6vypD1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
H | Histone | e6vypH1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
N [auth d] | Histone | e6vypd1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
R [auth h] | Histone | e6vyph1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: Histone | ECOD (1.6) |
S [auth M] | SWIRM | e6vypM3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: SWIRM | ECOD (1.6) |
S [auth M] | Amino_oxidase_2nd | e6vypM1 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C (From Topology) | T: FAD-linked reductases-C | F: Amino_oxidase_2nd | ECOD (1.6) |
S [auth M] | Amino_oxidase_1st | e6vypM2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Amino_oxidase_1st | ECOD (1.6) |
U [auth m] | SWIRM | e6vypm3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: SWIRM | ECOD (1.6) |
U [auth m] | Amino_oxidase_2nd | e6vypm1 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C (From Topology) | T: FAD-linked reductases-C | F: Amino_oxidase_2nd | ECOD (1.6) |
U [auth m] | Amino_oxidase_1st | e6vypm2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Amino_oxidase_1st | ECOD (1.6) |
W [auth K] | SWIRM | e6vypK3 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: SWIRM | ECOD (1.6) |
W [auth K] | Amino_oxidase_2nd | e6vypK2 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C (From Topology) | T: FAD-linked reductases-C | F: Amino_oxidase_2nd | ECOD (1.6) |
W [auth K] | Amino_oxidase_1st | e6vypK1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Amino_oxidase_1st | ECOD (1.6) |
Y [auth k] | SWIRM | e6vypk1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: SWIRM | ECOD (1.6) |
Y [auth k] | Amino_oxidase_2nd | e6vypk3 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C (From Topology) | T: FAD-linked reductases-C | F: Amino_oxidase_2nd | ECOD (1.6) |
Y [auth k] | Amino_oxidase_1st | e6vypk2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Amino_oxidase_1st | ECOD (1.6) |
T [auth N] | Myb_DNA-binding_3 | e6vypN1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Myb_DNA-binding_3 | ECOD (1.6) |
T [auth N] | KOG1194 | e6vypN2 | A: extended segments | X: Helical region in REST corepressor 1 (From Topology) | H: Helical region in REST corepressor 1 (From Topology) | T: Helical region in REST corepressor 1 | F: KOG1194 | ECOD (1.6) |
V [auth n] | Myb_DNA-binding_3 | e6vypn2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Myb_DNA-binding_3 | ECOD (1.6) |
V [auth n] | KOG1194 | e6vypn1 | A: extended segments | X: Helical region in REST corepressor 1 (From Topology) | H: Helical region in REST corepressor 1 (From Topology) | T: Helical region in REST corepressor 1 | F: KOG1194 | ECOD (1.6) |
X [auth L] | Myb_DNA-binding_3 | e6vypL1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Myb_DNA-binding_3 | ECOD (1.6) |
X [auth L] | KOG1194 | e6vypL2 | A: extended segments | X: Helical region in REST corepressor 1 (From Topology) | H: Helical region in REST corepressor 1 (From Topology) | T: Helical region in REST corepressor 1 | F: KOG1194 | ECOD (1.6) |
Z [auth l] | Myb_DNA-binding_3 | e6vypl2 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: Myb_DNA-binding_3 | ECOD (1.6) |
Z [auth l] | KOG1194 | e6vypl1 | A: extended segments | X: Helical region in REST corepressor 1 (From Topology) | H: Helical region in REST corepressor 1 (From Topology) | T: Helical region in REST corepressor 1 | F: KOG1194 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, E, K [auth a], O [auth e] | PF00125 | Core histone H2A/H2B/H3/H4 (Histone) | Core histone H2A/H2B/H3/H4 | - | Domain |
B, F, L [auth b], P [auth f] | PF15511 | Centromere kinetochore component CENP-T histone fold (CENP-T_C) | Centromere kinetochore component CENP-T histone fold | CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ... | Domain |
C, G, M [auth c], Q [auth g] | PF16211 | C-terminus of histone H2A (Histone_H2A_C) | C-terminus of histone H2A | - | Family |
S [auth M], U [auth m], W [auth K], Y [auth k] | PF04433 | SWIRM domain (SWIRM) | SWIRM domain | This SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in chromosomal proteins. It contains a helix-turn helix motif and binds to DNA [1]. | Domain |
S [auth M], U [auth m], W [auth K], Y [auth k] | PF01593 | Flavin containing amine oxidoreductase (Amino_oxidase) | Flavin containing amine oxidoreductase | This family consists of various amine oxidases, including maze polyamine oxidase (PAO) [1] and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene ... | Domain |
T [auth N], V [auth n], X [auth L], Z [auth l] | PF00249 | Myb-like DNA-binding domain (Myb_DNA-binding) | Myb-like DNA-binding domain | This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1]. | Domain |
T [auth N], V [auth n], X [auth L], Z [auth l] | PF20878 | Helical region in REST corepressor (REST_helical) | Helical region in REST corepressor | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
S [auth M], U [auth m], W [auth K], Y [auth k] | O60341 | : |
T [auth N], V [auth n], X [auth L], Z [auth l] | Q9UKL0 | :