Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyCore histone-like8041272 3001387 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCore histone-like8041272 3001387 SCOP2B (2022-06-29)
K [auth a]SCOP2B SuperfamilyCore histone-like8041272 3001387 SCOP2B (2022-06-29)
O [auth e]SCOP2B SuperfamilyCore histone-like8041272 3001387 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2022-06-29)
M [auth c]SCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2022-06-29)
Q [auth g]SCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2022-06-29)
T [auth N]SCOP2B SuperfamilyHomeodomain-like8044642 3000001 SCOP2B (2022-06-29)
T [auth N]SCOP2B SuperfamilyCoREST LSD1-binding region-like8056844 3002363 SCOP2B (2022-06-29)
V [auth n]SCOP2B SuperfamilyHomeodomain-like8044642 3000001 SCOP2B (2022-06-29)
V [auth n]SCOP2B SuperfamilyCoREST LSD1-binding region-like8056844 3002363 SCOP2B (2022-06-29)
X [auth L]SCOP2B SuperfamilyHomeodomain-like8044642 3000001 SCOP2B (2022-06-29)
X [auth L]SCOP2B SuperfamilyCoREST LSD1-binding region-like8056844 3002363 SCOP2B (2022-06-29)
Z [auth l]SCOP2B SuperfamilyHomeodomain-like8044642 3000001 SCOP2B (2022-06-29)
Z [auth l]SCOP2B SuperfamilyCoREST LSD1-binding region-like8056844 3002363 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2022-06-29)
L [auth b]SCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2022-06-29)
P [auth f]SCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)
R [auth h]SCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)
N [auth d]SCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)
S [auth M]SCOP2B SuperfamilyFlavoreductase-like8017500 3000055 SCOP2B (2022-06-29)
S [auth M]SCOP2B SuperfamilyLSD1 insert domain-like8056826 3002361 SCOP2B (2022-06-29)
S [auth M]SCOP2B SuperfamilyHomeodomain-like8001517 3000001 SCOP2B (2022-06-29)
S [auth M]SCOP2B SuperfamilyFlavoreductase-like8017500 3000055 SCOP2B (2022-06-29)
U [auth m]SCOP2B SuperfamilyHomeodomain-like8001517 3000001 SCOP2B (2022-06-29)
U [auth m]SCOP2B SuperfamilyLSD1 insert domain-like8056826 3002361 SCOP2B (2022-06-29)
U [auth m]SCOP2B SuperfamilyFlavoreductase-like8017500 3000055 SCOP2B (2022-06-29)
U [auth m]SCOP2B SuperfamilyFlavoreductase-like8017500 3000055 SCOP2B (2022-06-29)
W [auth K]SCOP2B SuperfamilyHomeodomain-like8001517 3000001 SCOP2B (2022-06-29)
W [auth K]SCOP2B SuperfamilyFlavoreductase-like8017500 3000055 SCOP2B (2022-06-29)
W [auth K]SCOP2B SuperfamilyFlavoreductase-like8017500 3000055 SCOP2B (2022-06-29)
W [auth K]SCOP2B SuperfamilyLSD1 insert domain-like8056826 3002361 SCOP2B (2022-06-29)
Y [auth k]SCOP2B SuperfamilyFlavoreductase-like8017500 3000055 SCOP2B (2022-06-29)
Y [auth k]SCOP2B SuperfamilyLSD1 insert domain-like8056826 3002361 SCOP2B (2022-06-29)
Y [auth k]SCOP2B SuperfamilyHomeodomain-like8001517 3000001 SCOP2B (2022-06-29)
Y [auth k]SCOP2B SuperfamilyFlavoreductase-like8017500 3000055 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00125e6vypA1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
EPF00125e6vypE1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
K [auth a]PF00125e6vypa1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
O [auth e]PF00125e6vype1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
CPF00125,PF16211e6vypC1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
GPF00125,PF16211e6vypG1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
M [auth c]PF00125,PF16211e6vypc1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
Q [auth g]PF00125,PF16211e6vypg1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
T [auth N]PF00249e6vypN1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF00249ECOD (1.6)
T [auth N]PF20878e6vypN2 A: extended segmentsX: Helical region in REST corepressor 1 (From Topology)H: Helical region in REST corepressor 1 (From Topology)T: Helical region in REST corepressor 1F: PF20878ECOD (1.6)
V [auth n]PF00249e6vypn2 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF00249ECOD (1.6)
V [auth n]PF20878e6vypn1 A: extended segmentsX: Helical region in REST corepressor 1 (From Topology)H: Helical region in REST corepressor 1 (From Topology)T: Helical region in REST corepressor 1F: PF20878ECOD (1.6)
X [auth L]PF00249e6vypL1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF00249ECOD (1.6)
X [auth L]PF20878e6vypL2 A: extended segmentsX: Helical region in REST corepressor 1 (From Topology)H: Helical region in REST corepressor 1 (From Topology)T: Helical region in REST corepressor 1F: PF20878ECOD (1.6)
Z [auth l]PF00249e6vypl2 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF00249ECOD (1.6)
Z [auth l]PF20878e6vypl1 A: extended segmentsX: Helical region in REST corepressor 1 (From Topology)H: Helical region in REST corepressor 1 (From Topology)T: Helical region in REST corepressor 1F: PF20878ECOD (1.6)
BPF15511e6vypB1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
FPF15511e6vypF1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
L [auth b]PF15511e6vypb1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
P [auth f]PF15511e6vypf1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
DPF00125e6vypD1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
HPF00125e6vypH1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
R [auth h]PF00125e6vyph1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
N [auth d]PF00125e6vypd1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
S [auth M]PF04433e6vypM3 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF04433ECOD (1.6)
S [auth M]PF01593e6vypM1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-C (From Topology)T: FAD-linked reductases-CF: PF01593ECOD (1.6)
S [auth M]PF01593e6vypM2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: PF01593ECOD (1.6)
U [auth m]PF04433e6vypm3 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF04433ECOD (1.6)
U [auth m]PF01593e6vypm1 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-C (From Topology)T: FAD-linked reductases-CF: PF01593ECOD (1.6)
U [auth m]PF01593e6vypm2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: PF01593ECOD (1.6)
W [auth K]PF04433e6vypK3 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF04433ECOD (1.6)
W [auth K]PF01593e6vypK2 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-C (From Topology)T: FAD-linked reductases-CF: PF01593ECOD (1.6)
W [auth K]PF01593e6vypK1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: PF01593ECOD (1.6)
Y [auth k]PF04433e6vypk1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF04433ECOD (1.6)
Y [auth k]PF01593e6vypk3 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-C (From Topology)T: FAD-linked reductases-CF: PF01593ECOD (1.6)
Y [auth k]PF01593e6vypk2 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: PF01593ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
E,
K [auth a],
O [auth e]
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
C,
G,
M [auth c],
Q [auth g]
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
C,
G,
M [auth c],
Q [auth g]
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
T [auth N],
V [auth n],
X [auth L],
Z [auth l]
PF00249Myb-like DNA-binding domain (Myb_DNA-binding)Myb-like DNA-binding domainThis family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].Domain
T [auth N],
V [auth n],
X [auth L],
Z [auth l]
PF20878Helical region in REST corepressor (REST_helical)Helical region in REST corepressor- Family
B,
F,
L [auth b],
P [auth f]
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
D,
H,
N [auth d],
R [auth h]
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
S [auth M],
U [auth m],
W [auth K],
Y [auth k]
PF04433SWIRM domain (SWIRM)SWIRM domainThis SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in chromosomal proteins. It contains a helix-turn helix motif and binds to DNA [1].Domain
S [auth M],
U [auth m],
W [auth K],
Y [auth k]
PF01593Flavin containing amine oxidoreductase (Amino_oxidase)Flavin containing amine oxidoreductaseThis family consists of various amine oxidases, including maze polyamine oxidase (PAO) [1] and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene ...This family consists of various amine oxidases, including maze polyamine oxidase (PAO) [1] and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines [2]. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium [3]. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines [1]. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
E,
K [auth a],
O [auth e]
Histone H3 -
C,
G,
M [auth c],
Q [auth g]
Histone H2A type 1 -
T [auth N],
V [auth n],
X [auth L],
Z [auth l]
REST corepressor 1
B,
F,
L [auth b],
P [auth f]
Histone H4 -
D,
H,
N [auth d],
R [auth h]
Histone H2B 1.1 -
AA [auth i],
I
DNA (191-MER)---
BA [auth j],
J
DNA (191-MER)---
S [auth M],
U [auth m],
W [auth K],
Y [auth k]
Lysine-specific histone demethylase 1A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
E,
K [auth a],
O [auth e]
IPR009072Histone-foldHomologous Superfamily
A,
E,
K [auth a],
O [auth e]
IPR007125Histone H2A/H2B/H3Domain
A,
E,
K [auth a],
O [auth e]
IPR000164Histone H3/CENP-AFamily
C,
G,
M [auth c],
Q [auth g]
IPR009072Histone-foldHomologous Superfamily
C,
G,
M [auth c],
Q [auth g]
IPR007125Histone H2A/H2B/H3Domain
C,
G,
M [auth c],
Q [auth g]
IPR002119Histone H2AFamily
C,
G,
M [auth c],
Q [auth g]
IPR032454Histone H2A, C-terminal domainDomain
C,
G,
M [auth c],
Q [auth g]
IPR032458Histone H2A conserved siteConserved Site
T [auth N],
V [auth n],
X [auth L],
Z [auth l]
IPR049048REST corepressor, helical domainDomain
T [auth N],
V [auth n],
X [auth L],
Z [auth l]
IPR009057Homeobox-like domain superfamilyHomologous Superfamily
T [auth N],
V [auth n],
X [auth L],
Z [auth l]
IPR017884SANT domainDomain
T [auth N],
V [auth n],
X [auth L],
Z [auth l]
IPR001005SANT/Myb domainDomain
T [auth N],
V [auth n],
X [auth L],
Z [auth l]
IPR000949ELM2 domainDomain
B,
F,
L [auth b],
P [auth f]
IPR009072Histone-foldHomologous Superfamily
B,
F,
L [auth b],
P [auth f]
IPR001951Histone H4Family
B,
F,
L [auth b],
P [auth f]
IPR035425CENP-T/Histone H4, histone foldDomain
B,
F,
L [auth b],
P [auth f]
IPR019809Histone H4, conserved siteConserved Site
B,
F,
L [auth b],
P [auth f]
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
D,
H,
N [auth d],
R [auth h]
IPR009072Histone-foldHomologous Superfamily
D,
H,
N [auth d],
R [auth h]
IPR007125Histone H2A/H2B/H3Domain
D,
H,
N [auth d],
R [auth h]
IPR000558Histone H2BFamily
S [auth M],
U [auth m],
W [auth K],
Y [auth k]
IPR002937Amine oxidaseDomain
S [auth M],
U [auth m],
W [auth K],
Y [auth k]
IPR009057Homeobox-like domain superfamilyHomologous Superfamily
S [auth M],
U [auth m],
W [auth K],
Y [auth k]
IPR017366Lysine-specific histone demethylaseFamily
S [auth M],
U [auth m],
W [auth K],
Y [auth k]
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
S [auth M],
U [auth m],
W [auth K],
Y [auth k]
IPR007526SWIRM domainDomain
S [auth M],
U [auth m],
W [auth K],
Y [auth k]
IPR036188FAD/NAD(P)-binding domain superfamilyHomologous Superfamily