6WLW
The Vo region of human V-ATPase in state 1 (focused refinement)
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
K [auth Q] | d6wlwq_ | Membrane and cell surface proteins and peptides | V-type ATP synthase subunit C | V-type ATP synthase subunit C | automated matches | automated matches | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth 1] | ATP-synt_C | e6wlw12 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
C [auth 2] | ATP-synt_C | e6wlw21 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
D [auth 3] | ATP-synt_C | e6wlw32 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
E [auth 4] | ATP-synt_C | e6wlw42 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
F [auth 5] | ATP-synt_C | e6wlw51 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
G [auth 6] | ATP-synt_C | e6wlw62 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
H [auth 7] | ATP-synt_C | e6wlw71 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
I [auth 8] | ATP-synt_C | e6wlw81 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
J [auth 9] | ATP-synt_C | e6wlw92 | A: extended segments | X: F1F0 ATP synthase subunit C (From Topology) | H: F1F0 ATP synthase subunit C (From Topology) | T: F1F0 ATP synthase subunit C | F: ATP-synt_C | ECOD (1.6) |
K [auth Q] | vATP-synt_AC39_3rd | e6wlwQ1 | A: alpha bundles | X: V-type ATP synthase subunit C | H: V-type ATP synthase subunit C (From Topology) | T: V-type ATP synthase subunit C | F: vATP-synt_AC39_3rd | ECOD (1.6) |
K [auth Q] | vATP-synt_AC39_1st | e6wlwQ2 | A: alpha bundles | X: V-type ATP synthase subunit C | H: V-type ATP synthase subunit C (From Topology) | T: V-type ATP synthase subunit C | F: vATP-synt_AC39_1st | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth 0] | PF00137 | ATP synthase subunit C (ATP-synt_C) | ATP synthase subunit C | This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. | Domain |
PF00137 | ATP synthase subunit C (ATP-synt_C) | ATP synthase subunit C | This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. | Domain | |
K [auth Q] | PF01992 | ATP synthase (C/AC39) subunit (vATP-synt_AC39) | ATP synthase (C/AC39) subunit | - | Family |
M [auth S] | PF05493 | ATP synthase subunit H (ATP_synt_H) | ATP synthase subunit H | - | Family |
O [auth U] | PF05827 | V-type proton ATPase subunit S1, luminal domain (VAS1_LD) | V-type proton ATPase subunit S1, luminal domain | This entry represents the luminal domain (LD) found in eukaryotic V-type proton ATPase subunit S1 involved in V-ATPase V0 assembly, including Ac45 subunit (ATP6AP1) [1,2]. This domain folds as a globular beta-prism structure which is structurally sim ... | Domain |
O [auth U] | PF20520 | V0 complex accessory subunit Ac45/VOA1 transmembrane domain (Ac45-VOA1_TM) | V0 complex accessory subunit Ac45/VOA1 transmembrane domain | This entry represents the transmembrane domain from ER/Golgi membrane proteins including V0 complex accessory subunit Ac45 (ATP6AP1, also known as V-type proton ATPase subunit S1) from animals and the yeast homologue V0 assembly protein 1 (VOA1) whic ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Proton or Sodium translocating F-type, V-type and A-type ATPases | V-type and F-type ATPases |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Vacuolar ATPase (V-ATPase) | V-ATPase complete structure, state 1 with SidK and ADP |