Human V-ATPase in state 3 with SidK and ADP
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B [auth O] | SCOP2 Family | Vacuolar ATP synthase subunit C | 8101528 | 4003895 | SCOP2 (2022-06-29) |
| B [auth O] | SCOP2 Superfamily | Vacuolar ATP synthase subunit C | 8101529 | 3001744 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| N [auth E] | LRR_1,LRR_8 | e6wm4E1 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| P [auth D] | LRR_1,LRR_8 | e6wm4D1 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| O [auth F] | LRR_1,LRR_8 | e6wm4F1 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| K [auth B] | LRR_1,LRR_8 | e6wm4B1 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| L [auth C] | LRR_1,LRR_8 | e6wm4C1 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| M [auth A] | LRR_1,LRR_8 | e6wm4A1 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| D [auth M] | LRR_1,LRR_8 | e6wm4M1 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| F [auth L] | LRR_1,LRR_8 | e6wm4L1 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| H [auth K] | LRR_1,LRR_8 | e6wm4K1 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| C [auth J] | LRR_1,LRR_8 | e6wm4J1 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| G [auth H] | LRR_1,LRR_8 | e6wm4H1 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| E [auth I] | LRR_1,LRR_8 | e6wm4I1 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| B [auth O] | Glycos_transf_3 | e6wm4O1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Glycos_transf_3 | ECOD (develop294) |
| IA [auth P] | Glycos_transf_3 | e6wm4P1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: Glycos_transf_3 | ECOD (develop294) |
| HA [auth Q] | LRR_1,LRR_8 | e6wm4Q1 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| AA [auth 3] | LRR_1,LRR_8 | e6wm431 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| BA [auth 4] | LRR_1,LRR_8 | e6wm441 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| DA [auth 6] | LRR_1,LRR_8 | e6wm461 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| Z [auth 2] | LRR_1,LRR_8 | e6wm421 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| Y [auth 1] | LRR_1,LRR_8 | e6wm411 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| GA [auth 9] | LRR_1,LRR_8 | e6wm491 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| FA [auth 8] | LRR_1,LRR_8 | e6wm481 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| EA [auth 7] | LRR_1,LRR_8 | e6wm471 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| CA [auth 5] | LRR_1,LRR_8 | e6wm451 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| U [auth N] | LRR_1,LRR_8 | e6wm4N1 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
| T [auth G] | LRR_1,LRR_8 | e6wm4G1 | A: alpha bundles | X: cradle loop barrel | H: N-terminal domain of poxin | T: N-terminal domain of poxin | F: LRR_1,LRR_8 | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C [auth J] | 3.30.2320.30 | Alpha Beta | 2-Layer Sandwich | hypothetical protein PF0899 fold | ATP synthase, E subunit, C-terminal | CATH (utative) |
| G [auth H] | 3.30.2320.30 | Alpha Beta | 2-Layer Sandwich | hypothetical protein PF0899 fold | ATP synthase, E subunit, C-terminal | CATH (utative) |
| E [auth I] | 3.30.2320.30 | Alpha Beta | 2-Layer Sandwich | hypothetical protein PF0899 fold | ATP synthase, E subunit, C-terminal | CATH (utative) |
| IA [auth P] | 1.25.10.10 | Mainly Alpha | Alpha Horseshoe | Leucine-rich Repeat Variant | Leucine-rich Repeat Variant | CATH (utative) |
| IA [auth P] | 1.25.40.150 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | V-type ATPase, subunit H, C-terminal domain | CATH (utative) |
| T [auth G] | 1.10.287.3240 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| N [auth E], O [auth F], P [auth D] | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain |
| N [auth E], O [auth F], P [auth D] | PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain |
| N [auth E], O [auth F], P [auth D] | PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain |
| K [auth B], L [auth C], M [auth A] | PF00006 | ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab) | ATP synthase alpha/beta family, nucleotide-binding domain | This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho. | Domain |
| K [auth B], L [auth C], M [auth A] | PF22919 | C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C) | C-terminal domain of V and A type ATP synthase | This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases. | Domain |
| K [auth B], L [auth C], M [auth A] | PF16886 | ATPsynthase alpha/beta subunit barrel-sandwich domain (ATP-synt_ab_Xtn) | ATPsynthase alpha/beta subunit barrel-sandwich domain | This barrel-sandwich domain is found in the alpha-beta catalytic subunit of VATA or V-type proton ATPase catalytic subunit at the N-terminal end. This domain has a circularly permuted topology compared to other barrel-sandwich domains. In VATA barrel ... | Domain |
| K [auth B], L [auth C], M [auth A] | PF02874 | ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N) | ATP synthase alpha/beta family, beta-barrel domain | This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella. | Domain |
| I [auth S] | PF05493 | ATP synthase subunit H (ATP_synt_H) | ATP synthase subunit H | - | Family |
| D [auth M], F [auth L], H [auth K] | PF03179 | Vacuolar (H+)-ATPase G subunit (V-ATPase_G) | Vacuolar (H+)-ATPase G subunit | - | Coiled-coil |
| C [auth J], E [auth I], G [auth H] | PF01991 | ATP synthase (E/31 kDa) subunit (vATP-synt_E) | ATP synthase (E/31 kDa) subunit | - | Family |
| B [auth O] | PF03223 | V-ATPase subunit C (V-ATPase_C) | V-ATPase subunit C | - | Family |
| IA [auth P] | PF11698 | V-ATPase subunit H (V-ATPase_H_C) | V-ATPase subunit H | - | Repeat |
| IA [auth P] | PF03224 | V-ATPase subunit H (V-ATPase_H_N) | V-ATPase subunit H | - | Repeat |
| HA [auth Q] | PF01992 | ATP synthase (C/AC39) subunit (vATP-synt_AC39) | ATP synthase (C/AC39) subunit | - | Family |
| PF00137 | ATP synthase subunit C (ATP-synt_C) | ATP synthase subunit C | This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. | Domain | |
| X [auth 0] | PF00137 | ATP synthase subunit C (ATP-synt_C) | ATP synthase subunit C | This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4]. | Domain |
| V [auth U] | PF05827 | V-type proton ATPase subunit S1, luminal domain (VAS1_LD) | V-type proton ATPase subunit S1, luminal domain | This entry represents the luminal domain (LD) found in eukaryotic V-type proton ATPase subunit S1 involved in V-ATPase V0 assembly, including Ac45 subunit (ATP6AP1) [1,2]. This domain folds as a globular beta-prism structure which is structurally sim ... | Domain |
| V [auth U] | PF20520 | V0 complex accessory subunit Ac45/VOA1 transmembrane domain (Ac45-VOA1_TM) | V0 complex accessory subunit Ac45/VOA1 transmembrane domain | This entry represents the transmembrane domain from ER/Golgi membrane proteins including V0 complex accessory subunit Ac45 (ATP6AP1, also known as V-type proton ATPase subunit S1) from animals and the yeast homologue V0 assembly protein 1 (VOA1) whic ... | Domain |
| U [auth N] | PF01990 | ATP synthase (F/14-kDa) subunit (ATP-synt_F) | ATP synthase (F/14-kDa) subunit | - | Family |
| T [auth G] | PF01813 | ATP synthase subunit D (ATP-synt_D) | ATP synthase subunit D | - | Family |
| A [auth R] | PF01496 | V-type ATPase 116kDa subunit family (V_ATPase_I) | V-type ATPase 116kDa subunit family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Vacuolar ATPase (V-ATPase) | V-ATPase complete structure, state 1 with SidK and ADP |














