6X62 | pdb_00006x62

Legionella pneumophila Dot T4SS OMC

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
ZA [auth JK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
YC [auth BK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
YB [auth MK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
S [auth FK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
RA [auth IK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
QB [auth LK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
K [auth EK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
JA [auth HK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
IB [auth KK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
GD [auth CK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
DC [auth AK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
C [auth DK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)
AA [auth GK]	SCOP2B Superfamily	OmpA-like	8098176	3001650	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Y [auth GD]	MIF4G	e6x62GD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
XA [auth JD]	MIF4G	e6x62JD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
WC [auth BD]	MIF4G	e6x62BD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
WB [auth MD]	MIF4G	e6x62MD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
W [auth Fd]	MIF4G	e6x62Fd1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
VA [auth Id]	MIF4G	e6x62Id1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
UC [auth Ad]	MIF4G	e6x62Ad1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
UB [auth Ld]	MIF4G	e6x62Ld1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
Q [auth FD]	MIF4G	e6x62FD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
PA [auth ID]	MIF4G	e6x62ID1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
OB [auth LD]	MIF4G	e6x62LD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
O [auth Ed]	MIF4G	e6x62Ed1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
NA [auth Hd]	MIF4G	e6x62Hd1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
MD [auth DD]	MIF4G	e6x62DD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
MB [auth Kd]	MIF4G	e6x62Kd1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
KD [auth Cd]	MIF4G	e6x62Cd1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
I [auth ED]	MIF4G	e6x62ED1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
HA [auth HD]	MIF4G	e6x62HD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
GB [auth KD]	MIF4G	e6x62KD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
G [auth Dd]	CARD	e6x62Dd01	A: beta barrels	X: Histone-like	H: all-alpha NTP pyrophosphatases	T: Hypothetical protein AF_0060	F: CARD	ECOD (v294.2)
FA [auth Gd]	MIF4G	e6x62Gd1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
ED [auth CD]	MIF4G	e6x62CD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
EB [auth Jd]	MIF4G	e6x62Jd1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
CD [auth Bd]	MIF4G	e6x62Bd1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
CC [auth Md]	MIF4G	e6x62Md1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
BA [auth AD]	MIF4G	e6x62AD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
QC [auth Z]	GAF	e6x62Z1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
PC [auth Y]	GAF	e6x62Y1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
OC [auth X]	GAF	e6x62X1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
NC [auth W]	GAF	e6x62W1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
MC [auth V]	GAF	e6x62V1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
LC [auth U]	GAF	e6x62U1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
KC [auth T]	GAF	e6x62T1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
JC [auth S]	GAF	e6x62S1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
IC [auth R]	GAF	e6x62R1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
HC [auth Q]	GAF	e6x62Q1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
GC [auth P]	GAF	e6x62P1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
FC [auth O]	GAF	e6x62O1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
EC [auth N]	GAF	e6x62N1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
ZA [auth JK]	GAF	e6x62JK1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
YC [auth BK]	GAF	e6x62BK1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
YB [auth MK]	GAF	e6x62MK1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
S [auth FK]	GAF	e6x62FK1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
RA [auth IK]	GAF	e6x62IK1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
QB [auth LK]	GAF	e6x62LK1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
K [auth EK]	GAF	e6x62EK1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
JA [auth HK]	GAF	e6x62HK1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
IB [auth KK]	GAF	e6x62KK1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
GD [auth CK]	GAF	e6x62CK1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
DC [auth AK]	GAF	e6x62AK1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
C [auth DK]	GAF	e6x62DK1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)
AA [auth GK]	GAF	e6x62GK1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: GAF	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
BA [auth AD], CC [auth Md], CD [auth Bd], EB [auth Jd], ED [auth CD], BA [auth AD], CC [auth Md], CD [auth Bd], EB [auth Jd], ED [auth CD], FA [auth Gd], G [auth Dd], GB [auth KD], HA [auth HD], I [auth ED], KD [auth Cd], MB [auth Kd], MD [auth DD], NA [auth Hd], O [auth Ed], OB [auth LD], PA [auth ID], Q [auth FD], UB [auth Ld], UC [auth Ad], VA [auth Id], W [auth Fd], WB [auth MD], WC [auth BD], XA [auth JD], Y [auth GD]	DotD	-	-	-
AB [auth JX], AC [auth MY], AD [auth BY], BB [auth JY], BC [auth MZ], AB [auth JX], AC [auth MY], AD [auth BY], BB [auth JY], BC [auth MZ], BD [auth BZ], CA [auth GX], D [auth DX], DA [auth GY], DB [auth JZ], E [auth DY], EA [auth GZ], EC [auth N], F [auth DZ], FC [auth O], GC [auth P], HC [auth Q], HD [auth CX], IC [auth R], ID [auth CY], JB [auth KX], JC [auth S], JD [auth CZ], KA [auth HX], KB [auth KY], KC [auth T], L [auth EX], LA [auth HY], LB [auth KZ], LC [auth U], M [auth EY], MA [auth HZ], MC [auth V], N [auth EZ], NC [auth W], OC [auth X], PC [auth Y], QC [auth Z], RB [auth LX], RC [auth AX], SA [auth IX], SB [auth LY], SC [auth AY], T [auth FX], TA [auth IY], TB [auth LZ], TC [auth AZ], U [auth FY], UA [auth IZ], V [auth FZ], ZB [auth MX], ZC [auth BX]	Type IV secretion system unknown protein fragment	-	-	-
AA [auth GK], C [auth DK], DC [auth AK], GD [auth CK], IB [auth KK], AA [auth GK], C [auth DK], DC [auth AK], GD [auth CK], IB [auth KK], JA [auth HK], K [auth EK], QB [auth LK], RA [auth IK], S [auth FK], YB [auth MK], YC [auth BK], ZA [auth JK]	Inner membrane lipoprotein YiaD	-	-	cellular anatomical structure membrane
B [auth DH], CB [auth AH], FD [auth CH], HB [auth KH], IA [auth HH], B [auth DH], CB [auth AH], FD [auth CH], HB [auth KH], IA [auth HH], J [auth EH], PB [auth LH], QA [auth IH], R [auth FH], XB [auth MH], XC [auth BH], YA [auth JH], Z [auth GH]	Type IV secretion protein IcmK	-	-	-
A [auth AC], DD [auth CC], FB [auth KC], GA [auth HC], H [auth EC], A [auth AC], DD [auth CC], FB [auth KC], GA [auth HC], H [auth EC], LD [auth DC], NB [auth LC], OA [auth IC], P [auth FC], VB [auth MC], VC [auth BC], WA [auth JC], X [auth GC]	DotC	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
BA [auth AD], CC [auth Md], CD [auth Bd], EB [auth Jd], ED [auth CD], BA [auth AD], CC [auth Md], CD [auth Bd], EB [auth Jd], ED [auth CD], FA [auth Gd], G [auth Dd], GB [auth KD], HA [auth HD], I [auth ED], KD [auth Cd], MB [auth Kd], MD [auth DD], NA [auth Hd], O [auth Ed], OB [auth LD], PA [auth ID], Q [auth FD], UB [auth Ld], UC [auth Ad], VA [auth Id], W [auth Fd], WB [auth MD], WC [auth BD], XA [auth JD], Y [auth GD]	IPR038140	DotD superfamily	Homologous Superfamily
BA [auth AD], CC [auth Md], CD [auth Bd], EB [auth Jd], ED [auth CD], BA [auth AD], CC [auth Md], CD [auth Bd], EB [auth Jd], ED [auth CD], FA [auth Gd], G [auth Dd], GB [auth KD], HA [auth HD], I [auth ED], KD [auth Cd], MB [auth Kd], MD [auth DD], NA [auth Hd], O [auth Ed], OB [auth LD], PA [auth ID], Q [auth FD], UB [auth Ld], UC [auth Ad], VA [auth Id], W [auth Fd], WB [auth MD], WC [auth BD], XA [auth JD], Y [auth GD]	IPR031817	DotD protein	Family
AA [auth GK], C [auth DK], DC [auth AK], GD [auth CK], IB [auth KK], AA [auth GK], C [auth DK], DC [auth AK], GD [auth CK], IB [auth KK], JA [auth HK], K [auth EK], QB [auth LK], RA [auth IK], S [auth FK], YB [auth MK], YC [auth BK], ZA [auth JK]	IPR006665	OmpA-like domain	Domain
AA [auth GK], C [auth DK], DC [auth AK], GD [auth CK], IB [auth KK], AA [auth GK], C [auth DK], DC [auth AK], GD [auth CK], IB [auth KK], JA [auth HK], K [auth EK], QB [auth LK], RA [auth IK], S [auth FK], YB [auth MK], YC [auth BK], ZA [auth JK]	IPR050330	Bacterial Outer Membrane Structural/Functional	Family
AA [auth GK], C [auth DK], DC [auth AK], GD [auth CK], IB [auth KK], AA [auth GK], C [auth DK], DC [auth AK], GD [auth CK], IB [auth KK], JA [auth HK], K [auth EK], QB [auth LK], RA [auth IK], S [auth FK], YB [auth MK], YC [auth BK], ZA [auth JK]	IPR036737	OmpA-like domain superfamily	Homologous Superfamily
A [auth AC], DD [auth CC], FB [auth KC], GA [auth HC], H [auth EC], A [auth AC], DD [auth CC], FB [auth KC], GA [auth HC], H [auth EC], LD [auth DC], NB [auth LC], OA [auth IC], P [auth FC], VB [auth MC], VC [auth BC], WA [auth JC], X [auth GC]	IPR031618	Putative type IV secretory system protein	Family

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth AC], AA [auth GK], BA [auth AD], C [auth DK], CC [auth Md] A [auth AC], AA [auth GK], BA [auth AD], C [auth DK], CC [auth Md], CD [auth Bd], DC [auth AK], DD [auth CC], EB [auth Jd], ED [auth CD], FA [auth Gd], FB [auth KC], G [auth Dd], GA [auth HC], GB [auth KD], GD [auth CK], H [auth EC], HA [auth HD], I [auth ED], IB [auth KK], JA [auth HK], K [auth EK], KD [auth Cd], LD [auth DC], MB [auth Kd], MD [auth DD], NA [auth Hd], NB [auth LC], O [auth Ed], OA [auth IC], OB [auth LD], P [auth FC], PA [auth ID], Q [auth FD], QB [auth LK], RA [auth IK], S [auth FK], UB [auth Ld], UC [auth Ad], VA [auth Id], VB [auth MC], VC [auth BC], W [auth Fd], WA [auth JC], WB [auth MD], WC [auth BD], X [auth GC], XA [auth JD], Y [auth GD], YB [auth MK], YC [auth BK], ZA [auth JK]	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Type IV Secretion Systems	Dot T4SS OMC type IV secretion system

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.