6XA6 | pdb_00006xa6

Crystal Structure of Human Scribble PDZ3:Vangl2 Complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth A]	Raptor_N	e6xa6A1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Raptor_N	ECOD (develop294)
A [auth B]	DctP	e6xa6B1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: DctP	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C [auth A]	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (utative)
A [auth B]	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], C [auth A]	PF00595	PDZ domain (PDZ)	PDZ domain	PDZ domains are found in diverse signaling proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth C], D	Vang-like protein 2	-	localization apical protein localization macromolecule localization intracellular protein localization developmental process multicellular organismal process animal organ development renal system development multicellular organism development anatomical structure development cell migration cellular process cell migration involved in kidney development cell motility localization apical protein localization macromolecule localization intracellular protein localization developmental process multicellular organismal process animal organ development renal system development multicellular organism development anatomical structure development cell migration cellular process cell migration involved in kidney development cell motility kidney development system development regulation of cytoskeleton organization regulation of biological process regulation of cellular component organization regulation of cellular process regulation of actin filament-based process actin cytoskeleton organization biological regulation regulation of organelle organization cellular component organization organelle organization regulation of actin cytoskeleton organization actin filament-based process cellular component organization or biogenesis cytoskeleton organization epithelium development epidermis development molting cycle process hair cycle tissue development skin development skin epidermis development hair follicle development molting cycle hair cycle process heart development cardiac chamber morphogenesis heart morphogenesis ventricular septum development circulatory system development anatomical structure morphogenesis cardiac septum development cardiac septum morphogenesis ventricular septum morphogenesis cardiac chamber development membranous septum morphogenesis animal organ morphogenesis cardiac ventricle development cellular component disassembly regulation of synapse pruning cell junction disassembly synapse pruning regulation of synapse organization cell junction organization regulation of synapse structure or activity synapse organization regulation of biological quality branching morphogenesis of an epithelial tube respiratory tube development lateral sprouting from an epithelium tube morphogenesis lung morphogenesis lung development respiratory system development epithelial tube morphogenesis tube development lateral sprouting involved in lung morphogenesis morphogenesis of an epithelium tissue morphogenesis morphogenesis of a branching structure epithelial tube branching involved in lung morphogenesis morphogenesis of a branching epithelium embryonic epithelial tube formation chordate embryonic development tube formation embryo development epithelial tube formation primary neural tube formation establishment of tissue polarity embryo development ending in birth or egg hatching establishment of planar polarity of embryonic epithelium morphogenesis of a polarized epithelium morphogenesis of embryonic epithelium establishment of planar polarity neural tube development embryonic morphogenesis establishment of planar polarity involved in neural tube closure nervous system development neural tube closure neural tube formation anatomical structure formation involved in morphogenesis tube closure muscle structure development muscle organ development muscle tissue morphogenesis muscular septum morphogenesis muscle organ morphogenesis axis elongation developmental growth growth developmental growth involved in morphogenesis convergent extension involved in axis elongation convergent extension carbohydrate derivative biosynthetic process proteoglycan biosynthetic process heparan sulfate proteoglycan biosynthetic process heparan sulfate proteoglycan metabolic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process glycoprotein metabolic process macromolecule biosynthetic process biosynthetic process protein O-linked glycosylation via xylose protein O-linked glycosylation metabolic process protein metabolic process macromolecule metabolic process proteoglycan metabolic process post-anal tail morphogenesis organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component assembly cilium assembly non-motile cilium assembly cilium organization cell projection assembly cellular response to stimulus cell surface receptor signaling pathway response to stimulus signaling Wnt signaling pathway, planar cell polarity pathway cell communication non-canonical Wnt signaling pathway signal transduction Wnt signaling pathway regulation of signaling regulation of Wnt signaling pathway regulation of signal transduction regulation of response to stimulus regulation of cell communication axonogenesis cellular developmental process plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis neurogenesis cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation axon guidance axon development cell morphogenesis involved in neuron differentiation dopaminergic neuron axon guidance generation of neurons neuron projection guidance neuron development ear morphogenesis embryonic organ morphogenesis ear development sensory organ development sensory organ morphogenesis inner ear development cochlea development inner ear morphogenesis cochlea morphogenesis embryonic organ development planar dichotomous subdivision of terminal units involved in lung branching morphogenesis dichotomous subdivision of terminal units involved in lung branching dichotomous subdivision of an epithelial terminal unit orthogonal dichotomous subdivision of terminal units involved in lung branching morphogenesis serotonergic neuron axon guidance inner ear receptor cell development mechanoreceptor differentiation inner ear receptor cell differentiation inner ear receptor cell stereocilium organization wound healing response to stress response to wounding digestive system development digestive tract development digestive tract morphogenesis establishment of body hair or bristle planar orientation establishment of body hair planar orientation neural plate development convergent extension involved in gastrulation convergent extension involved in organogenesis morphogenesis of an epithelial sheet gastrulation convergent extension involved in neural plate elongation neural plate elongation neural plate morphogenesis glomerulus development nephron development somatic stem cell population maintenance maintenance of cell number stem cell population maintenance somatic stem cell division stem cell division cell division small GTPase-mediated signal transduction Rho protein signal transduction intracellular signal transduction intracellular signaling cassette kidney morphogenesis anterior/posterior pattern specification pattern specification process regionalization embryonic heart tube development embryonic heart tube morphogenesis heart looping determination of bilateral symmetry determination of left/right symmetry specification of symmetry determination of heart left/right asymmetry left/right pattern formation establishment or maintenance of bipolar cell polarity establishment or maintenance of epithelial cell apical/basal polarity establishment or maintenance of apical/basal cell polarity establishment or maintenance of cell polarity regulation of animal organ morphogenesis regulation of developmental process regulation of establishment of planar polarity regulation of anatomical structure morphogenesis	postsynaptic specialization membrane postsynaptic specialization synapse membrane plasma membrane postsynaptic density membrane synaptic membrane cell periphery postsynaptic density postsynapse cellular anatomical structure neuron to neuron synapse organelle cell junction postsynaptic specialization membrane postsynaptic specialization synapse membrane plasma membrane postsynaptic density membrane synaptic membrane cell periphery postsynaptic density postsynapse cellular anatomical structure neuron to neuron synapse organelle cell junction postsynaptic membrane asymmetric synapse plasma membrane region cell-cell junction anchoring junction apical part of cell apical plasma membrane basal part of cell basal plasma membrane basolateral plasma membrane membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle intracellular organelle COPII-coated ER to Golgi transport vesicle cytoplasmic vesicle coated vesicle cytoplasm vesicle glutamatergic synapse cell pole actin filament bundle intracellular membraneless organelle actin cytoskeleton actomyosin cytoskeleton membraneless organelle stress fiber contractile actin filament bundle lateral plasma membrane apical cytoplasm
A [auth B], C [auth A]	Protein scribble homolog	cell adhesion molecule binding cadherin binding protein binding binding protein-macromolecule adaptor activity molecular adaptor activity signaling adaptor activity kinase binding enzyme binding protein kinase binding	multicellular organismal process inner ear receptor cell development cell projection organization sensory organ development epidermis development auditory receptor cell stereocilium organization neuron projection development epithelial cell differentiation hair cell differentiation multicellular organism development neuron differentiation cell differentiation inner ear development anatomical structure development multicellular organismal process inner ear receptor cell development cell projection organization sensory organ development epidermis development auditory receptor cell stereocilium organization neuron projection development epithelial cell differentiation hair cell differentiation multicellular organism development neuron differentiation cell differentiation inner ear development anatomical structure development animal organ morphogenesis system development developmental process embryonic organ morphogenesis mechanoreceptor differentiation epithelium development epidermal cell differentiation ear development embryonic morphogenesis nervous system development tissue development inner ear receptor cell differentiation generation of neurons auditory receptor cell development cellular developmental process cell development embryo development cell morphogenesis cellular component organization neurogenesis cellular component organization or biogenesis auditory receptor cell morphogenesis embryonic organ development ear morphogenesis plasma membrane bounded cell projection organization animal organ development inner ear auditory receptor cell differentiation cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis sensory organ morphogenesis neuron development inner ear morphogenesis cellular process inner ear receptor cell stereocilium organization glial cell migration gliogenesis astrocyte cell migration cell migration cell motility cell population proliferation regulation of biological process positive regulation of programmed cell death regulation of cellular process regulation of apoptotic process biological regulation positive regulation of biological process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death positive regulation of cellular process positive chemotaxis chemotaxis response to stimulus taxis response to chemical response to external stimulus locomotion tube development mammary gland morphogenesis mammary gland development gland development morphogenesis of an epithelium mammary gland duct morphogenesis tissue morphogenesis tube morphogenesis gland morphogenesis mammary gland epithelium development epithelial tube morphogenesis post-anal tail morphogenesis embryonic epithelial tube formation chordate embryonic development tube formation epithelial tube formation primary neural tube formation embryo development ending in birth or egg hatching morphogenesis of embryonic epithelium neural tube development neural tube closure neural tube formation anatomical structure formation involved in morphogenesis tube closure localization cellular localization receptor clustering macromolecule localization intracellular protein localization localization within membrane protein localization to membrane apoptotic process involved in development apoptotic process involved in morphogenesis import into cell regulation of localization regulation of cellular component organization receptor internalization transport postsynaptic neurotransmitter receptor internalization regulation of receptor internalization vesicle-mediated transport vesicle-mediated transport in synapse establishment of localization in cell regulation of postsynaptic neurotransmitter receptor internalization regulation of biological quality regulation of endocytosis regulation of transport regulation of receptor-mediated endocytosis regulation of vesicle-mediated transport establishment of localization neurotransmitter receptor internalization regulation of postsynaptic membrane neurotransmitter receptor levels postsynaptic endocytosis endocytosis receptor-mediated endocytosis cochlear nucleus development pons development head development brain development central nervous system development metencephalon development hindbrain development neural nucleus development synaptic vesicle endocytosis synaptic vesicle cycle presynaptic endocytosis synaptic vesicle recycling negative regulation of lymphocyte proliferation regulation of leukocyte activation negative regulation of biological process regulation of cell activation negative regulation of T cell proliferation negative regulation of cell adhesion negative regulation of leukocyte proliferation T cell activation lymphocyte proliferation regulation of immune system process regulation of leukocyte proliferation negative regulation of T cell activation negative regulation of leukocyte cell-cell adhesion regulation of cell population proliferation mononuclear cell proliferation negative regulation of cell-cell adhesion regulation of leukocyte cell-cell adhesion negative regulation of multicellular organismal process negative regulation of leukocyte activation regulation of activated T cell proliferation lymphocyte activation negative regulation of lymphocyte activation leukocyte proliferation leukocyte cell-cell adhesion leukocyte activation activated T cell proliferation negative regulation of mononuclear cell proliferation cell adhesion cell-cell adhesion negative regulation of cellular process regulation of multicellular organismal process regulation of cell-cell adhesion T cell proliferation regulation of lymphocyte proliferation negative regulation of cell population proliferation regulation of cell adhesion cell activation regulation of T cell activation negative regulation of cell activation regulation of T cell proliferation negative regulation of activated T cell proliferation negative regulation of immune system process immune system process regulation of mononuclear cell proliferation regulation of lymphocyte activation polarized epithelial cell differentiation morphogenesis of a polarized epithelium regulation of signaling signaling regulation of receptor recycling regulation of macromolecule metabolic process receptor recycling positive regulation of metabolic process receptor metabolic process positive regulation of receptor recycling positive regulation of macromolecule metabolic process metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of signaling wound healing response to stress response to wounding establishment of cell polarity establishment or maintenance of bipolar cell polarity establishment of monopolar cell polarity establishment or maintenance of monopolar cell polarity establishment of apical/basal cell polarity establishment or maintenance of apical/basal cell polarity establishment or maintenance of cell polarity activation of GTPase activity positive regulation of molecular function regulation of molecular function positive regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity positive regulation of catalytic activity regulation of GTPase activity positive regulation of GTPase activity protein localization to cell junction protein localization to adherens junction protein localization to cell-cell junction establishment of lymphocyte polarity establishment of T cell polarity establishment of organelle localization regulated exocytosis synaptic vesicle targeting synaptic vesicle exocytosis vesicle targeting cell communication synaptic signaling secretion by cell organelle localization signal release vesicle localization trans-synaptic signaling neurotransmitter secretion secretion establishment of vesicle localization export from cell cell-cell signaling neurotransmitter transport chemical synaptic transmission signal release from synapse exocytosis anterograde trans-synaptic signaling exocytic process multicellular organismal-level homeostasis epithelial structure maintenance homeostatic process anatomical structure homeostasis tissue homeostasis establishment of protein localization protein localization to synapse neurotransmitter receptor transport to postsynaptic membrane establishment of protein localization to plasma membrane establishment of protein localization to postsynaptic membrane endocytic recycling neurotransmitter receptor transport to plasma membrane neurotransmitter receptor transport, endosome to plasma membrane neurotransmitter receptor transport, endosome to postsynaptic membrane protein localization to cell periphery protein localization to postsynaptic membrane neurotransmitter receptor transport establishment of protein localization to membrane protein localization to plasma membrane intracellular transport protein-containing complex localization endosomal transport vesicle-mediated transport to the plasma membrane endosome to plasma membrane protein transport protein transport protein localization to postsynapse receptor localization to synapse intracellular protein transport regulation of type II interferon production type II interferon production positive regulation of macromolecule biosynthetic process positive regulation of biosynthetic process cytokine production regulation of cytokine production regulation of biosynthetic process gene expression macromolecule biosynthetic process positive regulation of type II interferon production regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process positive regulation of cytokine production establishment or maintenance of epithelial cell apical/basal polarity negative regulation of cell cycle negative regulation of mitotic cell cycle mitotic cell cycle regulation of mitotic cell cycle cell cycle regulation of cell cycle	extrinsic component of plasma membrane postsynaptic specialization membrane synapse extrinsic component of postsynaptic density membrane postsynaptic density membrane cell periphery cellular anatomical structure cell junction extrinsic component of postsynaptic specialization membrane asymmetric synapse postsynaptic specialization membrane plasma membrane synaptic membrane extrinsic component of plasma membrane postsynaptic specialization membrane synapse extrinsic component of postsynaptic density membrane postsynaptic density membrane cell periphery cellular anatomical structure cell junction extrinsic component of postsynaptic specialization membrane asymmetric synapse postsynaptic specialization membrane plasma membrane synaptic membrane extrinsic component of synaptic membrane postsynapse postsynaptic density neuron to neuron synapse organelle postsynaptic membrane plasma membrane region extrinsic component of membrane extrinsic component of postsynaptic membrane cell projection cell leading edge plasma membrane bounded cell projection lamellipodium cell-cell junction anchoring junction myelin sheath abaxonal region myelin sheath extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle basal part of cell basal plasma membrane basolateral plasma membrane Scrib-APC-beta-catenin complex protein-containing complex intracellular anatomical structure cytoplasm glutamatergic synapse adherens junction presynapse cell-cell contact zone nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen nuclear lumen immunological synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth C], D	IPR009539	Vang-like protein	Family
A [auth B], C [auth A]	IPR001611	Leucine-rich repeat	Repeat
A [auth B], C [auth A]	IPR050614	Synaptic Scaffolding LAP/MAGUK Families	Family
A [auth B], C [auth A]	IPR055414	Disease resistance R13L4/SHOC-2-like, LRR domain	Domain
A [auth B], C [auth A]	IPR003591	Leucine-rich repeat, typical subtype	Repeat
A [auth B], C [auth A]	IPR036034	PDZ superfamily	Homologous Superfamily
A [auth B], C [auth A]	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A [auth B], C [auth A]	IPR001478	PDZ domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B [auth C], D	Pharos: Q9ULK5	neural tube defects, susceptibility to tethered spinal cord syndrome neural tube defect spina bifida malignant glioma Neural Tube Defects non-small cell lung carcinoma pilocytic astrocytoma anencephaly craniorachischisis diastematomyelia Graves disease iniencephaly large cell medulloblastoma medulloblastoma neural tube defects, susceptibility to tethered spinal cord syndrome neural tube defect spina bifida malignant glioma Neural Tube Defects non-small cell lung carcinoma pilocytic astrocytoma anencephaly craniorachischisis diastematomyelia Graves disease iniencephaly large cell medulloblastoma medulloblastoma oligodendroglioma pituitary cancer astrocytic tumor Currarino triad interstitial cystitis malignant ependymoma neurenteric cyst pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primitive neuroectodermal tumor atypical teratoid rhabdoid tumor subependymal giant cell astrocytoma cystic fibrosis glioblastoma isolated anencephaly/exencephaly
A [auth B], C [auth A]	Pharos: Q14160	neural tube defects, susceptibility to astrocytic tumor lung cancer ovarian cancer spina bifida intellectual disability malignant ependymoma pancreatic ductal adenocarcinoma tuberculosis lung adenocarcinoma psoriasis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.