6Y3D | pdb_00006y3d

X-ray structure of thermophilic C-phycocyanin from Galdiera phlegrea

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth AAA]	SCOP2B Superfamily	Globin-like	8102106	3000554	SCOP2B (2022-06-29)
C [auth CCC]	SCOP2B Superfamily	Globin-like	8102106	3000554	SCOP2B (2022-06-29)
E [auth EEE]	SCOP2B Superfamily	Globin-like	8102106	3000554	SCOP2B (2022-06-29)
I [auth III]	SCOP2B Superfamily	Globin-like	8102106	3000554	SCOP2B (2022-06-29)
K [auth KKK]	SCOP2B Superfamily	Globin-like	8102106	3000554	SCOP2B (2022-06-29)
G [auth GGG]	SCOP2 Family	Phycocyanin-like phycobilisome proteins	8102105	4000579	SCOP2 (2022-06-29)
G [auth GGG]	SCOP2 Superfamily	Globin-like	8102106	3000554	SCOP2 (2022-06-29)
D [auth DDD]	SCOP2 Family	Phycocyanin-like phycobilisome proteins	8102103	4000579	SCOP2 (2022-06-29)
D [auth DDD]	SCOP2 Superfamily	Globin-like	8102104	3000554	SCOP2 (2022-06-29)
F [auth FFF]	SCOP2B Superfamily	Globin-like	8102104	3000554	SCOP2B (2022-06-29)
H [auth HHH]	SCOP2B Superfamily	Globin-like	8102104	3000554	SCOP2B (2022-06-29)
L [auth LLL]	SCOP2B Superfamily	Globin-like	8102104	3000554	SCOP2B (2022-06-29)
J [auth JJJ]	SCOP2B Superfamily	Globin-like	8102104	3000554	SCOP2B (2022-06-29)
B [auth BBB]	SCOP2B Superfamily	Globin-like	8102104	3000554	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth AAA]	Ribosomal_L36	e6y3dAAA1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L36	ECOD (develop294)
C [auth CCC]	Ribosomal_L36	e6y3dCCC1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L36	ECOD (develop294)
E [auth EEE]	Ribosomal_L36	e6y3dEEE1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L36	ECOD (develop294)
I [auth III]	Ribosomal_L36	e6y3dIII1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L36	ECOD (develop294)
K [auth KKK]	Ribosomal_L36	e6y3dKKK1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L36	ECOD (develop294)
G [auth GGG]	Ribosomal_L36	e6y3dGGG1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L36	ECOD (develop294)
D [auth DDD]	Ribosomal_L36	e6y3dDDD1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L36	ECOD (develop294)
F [auth FFF]	Ribosomal_L36	e6y3dFFF1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L36	ECOD (develop294)
H [auth HHH]	Ribosomal_L36	e6y3dHHH1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L36	ECOD (develop294)
L [auth LLL]	Ribosomal_L36	e6y3dLLL1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L36	ECOD (develop294)
J [auth JJJ]	Ribosomal_L36	e6y3dJJJ1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L36	ECOD (develop294)
B [auth BBB]	Ribosomal_L36	e6y3dBBB1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Ribosomal_L36	ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], K [auth KKK]	C-phycocyanin alpha chain	-	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex membrane protein complex light-harvesting complex phycobilisome
B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], L [auth LLL]	C-phycocyanin beta chain	-	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex membrane protein complex light-harvesting complex phycobilisome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], K [auth KKK]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], K [auth KKK]	IPR006246	Phycocyanin, alpha subunit	Family
A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], K [auth KKK]	IPR009050	Globin-like superfamily	Homologous Superfamily
A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], A [auth AAA], C [auth CCC], E [auth EEE], G [auth GGG], I [auth III], K [auth KKK]	IPR012128	Phycobilisome, alpha/beta subunit	Family
B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], L [auth LLL]	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], L [auth LLL]	IPR006247	Phycocyanin, beta subunit	Family
B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], L [auth LLL]	IPR009050	Globin-like superfamily	Homologous Superfamily
B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], L [auth LLL]	IPR012128	Phycobilisome, alpha/beta subunit	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], B [auth BBB], D [auth DDD], F [auth FFF], H [auth HHH], J [auth JJJ], L [auth LLL]	MEN	Parent Component: ASN RESID: AA0070 PSI-MOD : N4-methyl-L-asparagine MOD:00079

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.