6YLX | pdb_00006ylx

pre-60S State NE1 (TAP-Flag-Nop53)

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
H [auth L]SCOP2B SuperfamilyRibosomal protein L13e-like 8053159 3002162 SCOP2B (2022-06-29)
E [auth G]SCOP2B SuperfamilyL30e-like 8063962 3001739 SCOP2B (2022-06-29)
PA [auth y]SCOP2B SuperfamilyPentein 8036230 3000640 SCOP2B (2022-06-29)
D [auth F]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8052917 3001378 SCOP2B (2022-06-29)
D [auth F]SCOP2B SuperfamilyRibosomal L30p/L7e protein, N-terminal domain-lke 8052916 3002152 SCOP2B (2022-06-29)
JA [auth o]SCOP2B SuperfamilyRNA-binding domain, RBD 8061969 3000110 SCOP2B (2022-06-29)
HA [auth l]SCOP2B SuperfamilyRibosomal protein L39e 8078549 3001756 SCOP2B (2022-06-29)
GA [auth k]SCOP2B SuperfamilyRibosomal L38e protein-like 8053562 3002206 SCOP2B (2022-06-29)
FA [auth j]SCOP2B SuperfamilyZn-binding ribosomal proteins 8080044 3001320 SCOP2B (2022-06-29)
EA [auth i]SCOP2B SuperfamilyRibosomal protein L36e 8053115 3002161 SCOP2B (2022-06-29)
C [auth E]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053109 3000334 SCOP2B (2022-06-29)
CA [auth g]SCOP2B SuperfamilyRibosomal protein L34e-like 8053547 3002203 SCOP2B (2022-06-29)
BA [auth f]SCOP2B SuperfamilyTranslational proteins 8087451 3000811 SCOP2B (2022-06-29)
Y [auth c]SCOP2B SuperfamilyL30e-like 8039862 3001739 SCOP2B (2022-06-29)
V [auth Z]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053046 3000334 SCOP2B (2022-06-29)
U [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076760 3000334 SCOP2B (2022-06-29)
T [auth X]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8095962 3000210 SCOP2B (2022-06-29)
B [auth C]SCOP2B SuperfamilyRibosomal protein L4 8052816 3001146 SCOP2B (2022-06-29)
B [auth C]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like 8052815 3002143 SCOP2B (2022-06-29)
R [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like 8103364 3000433 SCOP2B (2022-06-29)
Q [auth U]SCOP2B Superfamily60S Ribosomal protein L22e 8053058 3002158 SCOP2B (2022-06-29)
N [auth R]SCOP2B SuperfamilyRibosomal protein L19 (L19e) 8077485 3000890 SCOP2B (2022-06-29)
M [auth Q]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8095970 3001045 SCOP2B (2022-06-29)
L [auth P]SCOP2B SuperfamilyRibosomal protein L22 8076708 3001078 SCOP2B (2022-06-29)
K [auth O]SCOP2B SuperfamilyRibosomal protein L13 8066053 3001134 SCOP2B (2022-06-29)
J [auth N]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8082481 3000210 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilyTranslational proteins 8078363 3000811 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth M]WD40, Beta-prop_WDR3_2nde6ylxM1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (develop294)
H [auth L]Pro_isomerasee6ylxL1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
G [auth K]WD40, Beta-prop_WDR3_2nde6ylxK1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (develop294)
F [auth H]WD40, Beta-prop_WDR3_2nde6ylxH1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (develop294)
E [auth G]Pro_isomerasee6ylxG1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
PA [auth y]WD40, Beta-prop_WDR3_2nde6ylxy1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (develop294)
NA [auth t]WD40, Beta-prop_WDR3_2nde6ylxt1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (develop294)
D [auth F]Pro_isomerasee6ylxF1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
HA [auth l]WD40, Beta-prop_WDR3_2nde6ylxl1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (develop294)
GA [auth k]Pro_isomerasee6ylxk1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
FA [auth j]WD40, Beta-prop_WDR3_2nde6ylxj1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (develop294)
EA [auth i]WD40, Beta-prop_WDR3_2nde6ylxi1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (develop294)
DA [auth h]Pro_isomerasee6ylxh1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
C [auth E]Pro_isomerasee6ylxE1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
CA [auth g]WD40, Beta-prop_WDR3_2nde6ylxg1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (develop294)
BA [auth f]Pro_isomerasee6ylxf1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
AA [auth e]Pro_isomerasee6ylxe1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
Z [auth d]Pro_isomerasee6ylxd1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
Y [auth c]Pro_isomerasee6ylxc1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
W [auth a]Pro_isomerasee6ylxa1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
V [auth Z]Pro_isomerasee6ylxZ1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
U [auth Y]WD40, Beta-prop_WDR3_2nde6ylxY1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (develop294)
T [auth X]WD40, Beta-prop_WDR3_2nde6ylxX1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (develop294)
B [auth C]Pro_isomerasee6ylxC1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
S [auth W]WD40, Beta-prop_WDR3_2nde6ylxW1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (develop294)
R [auth V]WD40, Beta-prop_WDR3_2nde6ylxV1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (develop294)
Q [auth U]WD40, Beta-prop_WDR3_2nde6ylxU1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (develop294)
O [auth S]Pro_isomerasee6ylxS1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
N [auth R]Pro_isomerasee6ylxR1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
M [auth Q]Pro_isomerasee6ylxQ1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
L [auth P]WD40, Beta-prop_WDR3_2nde6ylxP1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (develop294)
K [auth O]Pro_isomerasee6ylxO1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)
J [auth N]WD40, Beta-prop_WDR3_2nde6ylxN1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: WD40, Beta-prop_WDR3_2ndECOD (develop294)
A [auth B]Pro_isomerasee6ylxB1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Pro_isomeraseECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
I [auth M]PF00467KOW motif (KOW)KOW motif- Family
H [auth L]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
H [auth L]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
G [auth K]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
G [auth K]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10. Domain
F [auth H]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
F [auth H]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
E [auth G]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
D [auth F]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
D [auth F]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35AeThis entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. Domain
C [auth E]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
C [auth E]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
V [auth Z]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
U [auth Y]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
U [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
U [auth Y]PF00467KOW motif (KOW)KOW motif- Family
T [auth X]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
T [auth X]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
B [auth C]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain
B [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
S [auth W]PF01728FtsJ-like methyltransferase (FtsJ)FtsJ-like methyltransferase- Family
S [auth W]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1]. Domain
S [auth W]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
R [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
Q [auth U]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24eDomain
Q [auth U]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
P [auth T]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
O [auth S]PF08701GNL3L/Grn1 putative GTPase (GN3L_Grn1)GNL3L/Grn1 putative GTPase- Family
O [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain
N [auth R]PF01280Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e)Ribosomal protein L19e, N-terminal domainThis domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain
N [auth R]PF25476Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C)Ribosomal protein L19e, C-terminal domainThis domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain
N [auth R]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
L [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
K [auth O]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
K [auth O]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
J [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
J [auth N]PF06732Pescadillo N-terminus (Pescadillo_N)Pescadillo N-terminus- Family
A [auth B]PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins. Domain
A [auth B]PF06858Nucleolar GTP-binding protein 1 (NOG1) (NOG1)Nucleolar GTP-binding protein 1 (NOG1)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth M]60S ribosomal protein L14-A
H [auth L]60S ribosomal protein L13-A
G [auth K]Proteasome-interacting protein CIC1
F [auth H]60S ribosomal protein L9-A
E [auth G]60S ribosomal protein L8-A
UA [auth w]27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
TA [auth 6]ITS2---
SA [auth 2]5.8S rRNA---
RA [auth 1]25S rRNA---
QA [auth z]UPF0642 protein YBL028C- -
PA [auth y]Eukaryotic translation initiation factor 6
OA [auth u]Ribosome biogenesis protein RLP24
NA [auth t]Ribosome biogenesis protein RLP7
D [auth F]60S ribosomal protein L7-A
MA [auth s]Nuclear GTP-binding protein NUG1
LA [auth r]Ribosome biogenesis protein NSA2-
KA [auth q]Ribosome biogenesis protein NOP53
JA [auth o]Ribosome biogenesis protein 15
IA [auth n]Pescadillo homolog
HA [auth l]60S ribosomal protein L39
GA [auth k]60S ribosomal protein L38
FA [auth j]60S ribosomal protein L37-A
EA [auth i]60S ribosomal protein L36-A
DA [auth h]60S ribosomal protein L35-A
C [auth E]60S ribosomal protein L6-A
CA [auth g]60S ribosomal protein L34-A
BA [auth f]60S ribosomal protein L33-A
AA [auth e]60S ribosomal protein L32
Z [auth d]60S ribosomal protein L31-A
Y [auth c]60S ribosomal protein L30
X [auth b]Nucleolar GTP-binding protein 1
W [auth a]60S ribosomal protein L28
V [auth Z]60S ribosomal protein L27-A
U [auth Y]60S ribosomal protein L26-A
T [auth X]60S ribosomal protein L25
B [auth C]60S ribosomal protein L4-A
S [auth W]Ribosome assembly factor MRT4
R [auth V]60S ribosomal protein L23-A
Q [auth U]60S ribosomal protein L22-A
P [auth T]60S ribosomal protein L21-A
O [auth S]60S ribosomal protein L20-A
N [auth R]60S ribosomal protein L19-A
M [auth Q]60S ribosomal protein L18-A
L [auth P]60S ribosomal protein L17-A
K [auth O]60S ribosomal protein L16-A
J [auth N]60S ribosomal protein L15-A
A [auth B]60S ribosomal protein L3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
I [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
I [auth M]IPR039660Large ribosomal subunit protein eL14Family
I [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
I [auth M]IPR005824KOWDomain
H [auth L]IPR001380Large ribosomal subunit protein eL13Family
H [auth L]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
G [auth K]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
G [auth K]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
F [auth H]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
F [auth H]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
F [auth H]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
F [auth H]IPR000702Large ribosomal subunit protein uL6-likeFamily
E [auth G]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
E [auth G]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
E [auth G]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
E [auth G]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
E [auth G]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
E [auth G]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
UA [auth w]IPR024576Ribosomal RNA methyltransferase Spb1, domain of unknown function DUF3381Domain
UA [auth w]IPR012920Ribosomal RNA methyltransferase, SPB1-like, C-terminalDomain
UA [auth w]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
UA [auth w]IPR002877Ribosomal RNA methyltransferase, FtsJ domainDomain
UA [auth w]IPR015507Ribosomal RNA large subunit methyltransferase EFamily
UA [auth w]IPR028589AdoMet-dependent rRNA methyltransferase SPB1-likeFamily
UA [auth w]IPR050082Ribosomal RNA large subunit methyltransferase RlmEFamily
QA [auth z]IPR019434Domain of unknown function DUF2423Domain
PA [auth y]IPR002769Translation initiation factor IF6Family
OA [auth u]IPR011017TRASH domainDomain
OA [auth u]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
OA [auth u]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
OA [auth u]IPR056366Large ribosomal subunit protein eL24Family
NA [auth t]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
NA [auth t]IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
NA [auth t]IPR039699Large ribosomal subunit protein uL30Family
NA [auth t]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
NA [auth t]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
D [auth F]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
D [auth F]IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
D [auth F]IPR005998Large ribosomal subunit protein uL30, eukaryotaFamily
D [auth F]IPR039699Large ribosomal subunit protein uL30Family
D [auth F]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotaDomain
D [auth F]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
D [auth F]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
MA [auth s]IPR050755TRAFAC YlqF/YawG GTPases, Ribosome MaturationFamily
MA [auth s]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
MA [auth s]IPR006073GTP binding domainDomain
MA [auth s]IPR014813Guanine nucleotide-binding protein-like 3, N-terminal domainDomain
MA [auth s]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
MA [auth s]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
LA [auth r]IPR039411Ribosomal biogenesis NSA2 familyFamily
LA [auth r]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
KA [auth q]IPR011687Ribosome biogenesis protein Nop53/GLTSCR2Family
JA [auth o]IPR000504RNA recognition motif domainDomain
JA [auth o]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
JA [auth o]IPR034469Ribosome biogenesis protein 15, RNA recognition motifDomain
JA [auth o]IPR035979RNA-binding domain superfamilyHomologous Superfamily
IA [auth n]IPR010613PescadilloFamily
IA [auth n]IPR001357BRCT domainDomain
IA [auth n]IPR036420BRCT domain superfamilyHomologous Superfamily
HA [auth l]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
HA [auth l]IPR000077Large ribosomal subunit protein eL39Family
HA [auth l]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
GA [auth k]IPR002675Large ribosomal subunit protein eL38Family
GA [auth k]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
FA [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
FA [auth j]IPR001569Large ribosomal subunit protein eL37Family
FA [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
FA [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
EA [auth i]IPR000509Large ribosomal subunit protein eL36Family
EA [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
DA [auth h]IPR001854Large ribosomal subunit protein uL29Family
DA [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
DA [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
DA [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotaFamily
C [auth E]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
C [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
C [auth E]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
C [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
C [auth E]IPR000915Large ribosomal subunit protein eL6Family
CA [auth g]IPR008195Large ribosomal subunit protein eL34Family
CA [auth g]IPR038562Large ribosomal subunit protein eL34, C-terminal domain superfamilyHomologous Superfamily
CA [auth g]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
BA [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
BA [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
BA [auth f]IPR001780Large ribosomal subunit protein eL33Family
BA [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
AA [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
AA [auth e]IPR001515Large ribosomal subunit protein eL32Family
AA [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
Z [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
Z [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
Z [auth d]IPR000054Large ribosomal subunit protein eL31Family
Y [auth c]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
Y [auth c]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
Y [auth c]IPR039109Large ribosomal subunit protein eL30-likeFamily
Y [auth c]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
X [auth b]IPR024926Nucleolar GTP-binding protein 1Family
X [auth b]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
X [auth b]IPR012973NOG, C-terminalDomain
X [auth b]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
X [auth b]IPR041623NOG1, N-terminal helical domainDomain
X [auth b]IPR006073GTP binding domainDomain
X [auth b]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
W [auth a]IPR021131Large ribosomal subunit protein uL15/eL18Domain
W [auth a]IPR030878Large ribosomal subunit protein uL15Family
W [auth a]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
W [auth a]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
V [auth Z]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
V [auth Z]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
V [auth Z]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
V [auth Z]IPR001141Large ribosomal subunit protein eL27Family
V [auth Z]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
U [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryota_archaeaFamily
U [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
U [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
U [auth Y]IPR005824KOWDomain
U [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
U [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
T [auth X]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
T [auth X]IPR013025Large ribosomal subunit protein uL23-likeFamily
T [auth X]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
T [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
T [auth X]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
B [auth C]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
B [auth C]IPR002136Large ribosomal subunit protein uL4Family
B [auth C]IPR013000Large ribosomal subunit protein uL4, eukaryota/archaea, conserved siteConserved Site
B [auth C]IPR045240Large ribosomal subunit protein uL4, eukaryota/archaeaFamily
B [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
S [auth W]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
S [auth W]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
S [auth W]IPR001790Large ribosomal subunit protein uL10, N-terminalDomain
S [auth W]IPR051742Ribosomal Assembly Factor uL10Family
S [auth W]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
S [auth W]IPR033867Ribosome assembly factor Mrt4Family
R [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
R [auth V]IPR000218Large ribosomal subunit protein uL14Family
R [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
Q [auth U]IPR002671Large ribosomal subunit protein eL22Family
Q [auth U]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
P [auth T]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
P [auth T]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
P [auth T]IPR001147Large ribosomal subunit protein eL21Family
P [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
O [auth S]IPR028877Large ribosomal subunit protein eL20Family
O [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
O [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotaFamily
N [auth R]IPR039547Large ribosomal subunit protein eL19Family
N [auth R]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
N [auth R]IPR057260Ribosomal protein L19e, C-terminal domainDomain
N [auth R]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
N [auth R]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
N [auth R]IPR057259Ribosomal protein L19e, N-terminal domainDomain
N [auth R]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
N [auth R]IPR000196Large ribosomal subunit protein eL19 domainDomain
M [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
M [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
M [auth Q]IPR000039Large ribosomal subunit protein eL18Family
M [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
L [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
L [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryota/archaeaFamily
L [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
L [auth P]IPR001063Large ribosomal subunit protein uL22Family
K [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
K [auth O]IPR005822Large ribosomal subunit protein uL13Family
K [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
K [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryota/archaeaFamily
J [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
J [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
J [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
J [auth N]IPR000439Large ribosomal subunit protein eL15Family
A [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
A [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
A [auth B]IPR000597Large ribosomal subunit protein uL3Family
A [auth B]IPR045077Large ribosomal subunit protein uL3, archaea/eukaryotaFamily
A [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily