Annotations: 6ZIH

Topological model of p2 virion baseplate in activated conformation

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Y [auth R]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
Y [auth R]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
Y [auth R]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
X [auth Q]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
X [auth Q]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
X [auth Q]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
W [auth P]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
W [auth P]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
W [auth P]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
V [auth O]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
V [auth O]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
V [auth O]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
U [auth N]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
U [auth N]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
U [auth N]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
T [auth M]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
T [auth M]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
T [auth M]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
S [auth L]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
S [auth L]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
S [auth L]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
R [auth K]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
R [auth K]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
R [auth K]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
Q [auth J]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
Q [auth J]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
Q [auth J]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
P [auth I]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
P [auth I]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
P [auth I]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
O [auth H]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
O [auth H]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
O [auth H]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
N [auth G]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
N [auth G]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
N [auth G]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
M [auth F]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
M [auth F]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
M [auth F]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
L [auth E]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
L [auth E]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
L [auth E]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
K [auth D]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
K [auth D]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
K [auth D]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
J [auth C]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
J [auth C]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
J [auth C]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
I [auth B]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
I [auth B]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
I [auth B]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)
H [auth A]	SCOP2B Superfamily	Bacteriophage trimeric proteins domain	8036194	3000915	SCOP2B (2022-06-29)
H [auth A]	SCOP2B Superfamily	Phage fibre proteins	8036192	3000351	SCOP2B (2022-06-29)
H [auth A]	SCOP2B Superfamily	Virus attachment protein globular domain	8036189	3001376	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Y [auth R]	PA14	e6zihR1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
X [auth Q]	PA14	e6zihQ1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
W [auth P]	PA14	e6zihP1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
V [auth O]	PA14	e6zihO1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
U [auth N]	PA14	e6zihN1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
T [auth M]	PA14	e6zihM1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
S [auth L]	PA14	e6zihL1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
R [auth K]	PA14	e6zihK1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
Q [auth J]	PA14	e6zihJ1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
P [auth I]	PA14	e6zihI1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
O [auth H]	PA14	e6zihH1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
N [auth G]	PA14	e6zihG1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
M [auth F]	PA14	e6zihF1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
L [auth E]	PA14	e6zihE1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
K [auth D]	PA14	e6zihD1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
J [auth C]	PA14	e6zihC1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
I [auth B]	PA14	e6zihB1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
H [auth A]	PA14	e6zihA1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
GA [auth Z]	PA14	e6zihZ1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
G [auth 1]	PA14	e6zih11	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
FA [auth Y]	PA14	e6zihY1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
Z [auth S]	PA14	e6zihS1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
F [auth 4]	PA14	e6zih41	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
EA [auth X]	PA14	e6zihX1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
E [auth 5]	PA14	e6zih51	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
DA [auth W]	PA14	e6zihW1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
D [auth 6]	PA14	e6zih61	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
CA [auth V]	PA14	e6zihV1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
C [auth 7]	PA14	e6zih71	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
BA [auth U]	PA14	e6zihU1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
B [auth 3]	PA14	e6zih31	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
AA [auth T]	PA14	e6zihT1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)
A [auth 2]	PA14	e6zih21	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F: PA14	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N], V [auth O], W [auth P], X [auth Q], Y [auth R]	Receptor binding protein	-	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction receptor-mediated virion attachment to host cell entry receptor-mediated virion attachment to host cell cell adhesion cellular process symbiont entry into host cell symbiont entry into host	virus tail virion component virus tail, baseplate
FA [auth Y], G [auth 1], GA [auth Z]	Baseplate protein gp16	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	virus tail virion component virus tail, baseplate
A [auth 2], AA [auth T], B [auth 3], BA [auth U], C [auth 7], A [auth 2], AA [auth T], B [auth 3], BA [auth U], C [auth 7], CA [auth V], D [auth 6], DA [auth W], E [auth 5], EA [auth X], F [auth 4], Z [auth S]	Distal tail protein	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	virus tail virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N], V [auth O], W [auth P], X [auth Q], Y [auth R]	IPR048779	Receptor binding protein, neck domain	Domain
H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N], V [auth O], W [auth P], X [auth Q], Y [auth R]	IPR048780	Receptor-binding protein, N-terminal shoulder domain	Domain
H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N], V [auth O], W [auth P], X [auth Q], Y [auth R]	IPR008982	Adenovirus pIV-like, attachment domain	Homologous Superfamily
H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G], O [auth H], P [auth I], Q [auth J], R [auth K], S [auth L], T [auth M], U [auth N], V [auth O], W [auth P], X [auth Q], Y [auth R]	IPR015027	Receptor-binding protein of phage tail base-plate Siphoviridae, head	Domain
FA [auth Y], G [auth 1], GA [auth Z]	IPR048782	Phage tail base-plate attachment protein, C-terminal barrel domain	Domain
FA [auth Y], G [auth 1], GA [auth Z]	IPR043073	Baseplate protein Gp16, domain D4	Homologous Superfamily
FA [auth Y], G [auth 1], GA [auth Z]	IPR048784	Phage tail base-plate attachment protein, N0 domain	Domain
FA [auth Y], G [auth 1], GA [auth Z]	IPR048783	Phage tail base-plate attachment protein, C-terminal insertion domain	Domain
FA [auth Y], G [auth 1], GA [auth Z]	IPR043075	Baseplate protein Gp16, domain 1 and 2	Homologous Superfamily
FA [auth Y], G [auth 1], GA [auth Z]	IPR031861	Phage tail base-plate attachment protein, N-terminal barrel domain	Domain
A [auth 2], AA [auth T], B [auth 3], BA [auth U], C [auth 7], A [auth 2], AA [auth T], B [auth 3], BA [auth U], C [auth 7], CA [auth V], D [auth 6], DA [auth W], E [auth 5], EA [auth X], F [auth 4], Z [auth S]	IPR048272	Distal tail protein, C-terminal domain	Domain
A [auth 2], AA [auth T], B [auth 3], BA [auth U], C [auth 7], A [auth 2], AA [auth T], B [auth 3], BA [auth U], C [auth 7], CA [auth V], D [auth 6], DA [auth W], E [auth 5], EA [auth X], F [auth 4], Z [auth S]	IPR031899	Distal tail protein, N-terminal domain	Domain

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

6ZIH | pdb_00006zih

Topological model of p2 virion baseplate in activated conformation

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage