6ZQW
Cryo-EM structure of immature Spondweni virus
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02832 | e6zqwA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF02832 | ECOD (1.6) |
A | PF00869 | e6zqwA1 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: PF00869 | ECOD (1.6) |
A | PF21659 | e6zqwA3 | A: alpha arrays | X: Transmembrane domain of envelope protein E (From Topology) | H: Transmembrane domain of envelope protein E (From Topology) | T: Transmembrane domain of envelope protein E | F: PF21659 | ECOD (1.6) |
C [auth D] | PF02832 | e6zqwD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF02832 | ECOD (1.6) |
C [auth D] | PF00869 | e6zqwD1 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: PF00869 | ECOD (1.6) |
C [auth D] | PF21659 | e6zqwD3 | A: alpha arrays | X: Transmembrane domain of envelope protein E (From Topology) | H: Transmembrane domain of envelope protein E (From Topology) | T: Transmembrane domain of envelope protein E | F: PF21659 | ECOD (1.6) |
E [auth G] | PF02832 | e6zqwG3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF02832 | ECOD (1.6) |
E [auth G] | PF00869 | e6zqwG2 | A: beta complex topology | X: Viral glycoprotein, central and dimerisation domains-like | H: Viral glycoprotein, central and dimerisation domains (From Topology) | T: Viral glycoprotein, central and dimerisation domains | F: PF00869 | ECOD (1.6) |
E [auth G] | PF21659 | e6zqwG1 | A: alpha arrays | X: Transmembrane domain of envelope protein E (From Topology) | H: Transmembrane domain of envelope protein E (From Topology) | T: Transmembrane domain of envelope protein E | F: PF21659 | ECOD (1.6) |
B | PF01570 | e6zqwB1 | A: beta sandwiches | X: HSP40/DnaJ peptide-binding domain (From Topology) | H: HSP40/DnaJ peptide-binding domain (From Topology) | T: HSP40/DnaJ peptide-binding domain | F: PF01570 | ECOD (1.6) |
D [auth E] | PF01570 | e6zqwE1 | A: beta sandwiches | X: HSP40/DnaJ peptide-binding domain (From Topology) | H: HSP40/DnaJ peptide-binding domain (From Topology) | T: HSP40/DnaJ peptide-binding domain | F: PF01570 | ECOD (1.6) |
F [auth H] | PF01570 | e6zqwH1 | A: beta sandwiches | X: HSP40/DnaJ peptide-binding domain (From Topology) | H: HSP40/DnaJ peptide-binding domain (From Topology) | T: HSP40/DnaJ peptide-binding domain | F: PF01570 | ECOD (1.6) |
G [auth I] | PF01004 | e6zqwI1 | A: extended segments | X: Small envelope protein M (From Topology) | H: Small envelope protein M (From Topology) | T: Small envelope protein M | F: PF01004 | ECOD (1.6) |
H [auth F] | PF01004 | e6zqwF1 | A: extended segments | X: Small envelope protein M (From Topology) | H: Small envelope protein M (From Topology) | T: Small envelope protein M | F: PF01004 | ECOD (1.6) |
I [auth C] | PF01004 | e6zqwC1 | A: extended segments | X: Small envelope protein M (From Topology) | H: Small envelope protein M (From Topology) | T: Small envelope protein M | F: PF01004 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth D], E [auth G] | PF00869 | Flavivirus glycoprotein, central and dimerisation domains (Flavi_glycoprot) | Flavivirus glycoprotein, central and dimerisation domains | - | Domain |
A, C [auth D], E [auth G] | PF21659 | Flavivirus envelope glycoprotein E, stem/anchor domain (Flavi_E_stem) | Flavivirus envelope glycoprotein E, stem/anchor domain | This entry represents the stem/anchor domain found at the C-terminal of envelope glycoprotein E from Flavivirus. This domain comprises a stem region followed by two transmembrane anchor domains [1-5]. | Domain |
A, C [auth D], E [auth G] | PF02832 | Flavivirus glycoprotein, immunoglobulin-like domain (Flavi_glycop_C) | Flavivirus glycoprotein, immunoglobulin-like domain | - | Domain |
PF01570 | Flavivirus polyprotein propeptide (Flavi_propep) | Flavivirus polyprotein propeptide | - | Family | |
PF01004 | Flavivirus envelope glycoprotein M (Flavi_M) | Flavivirus envelope glycoprotein M | - | Family |