Warning
You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.
Help
Contact us
Toggle navigation
RCSB PDB
Deposit
Prepare Data
PDBx/mmCIF file
pdb_extract
SF-Tool
Ligand Expo
MAXIT
Validate Data
Validation Server
Validation API
Information for Journals
Validation Task Forces
Deposit Data
wwPDB OneDep System
PDB-Dev
Help and Resources
Deposit FAQ
Validation FAQ
Tutorials
Annotation Policies
Processing Procedures
PDBx/mmCIF Dictionary
PDBx/mmCIF User Guide
Chemical Component Dictionary
Biologically Interesting Molecule Reference Dictionary (BIRD)
BioSync/Beamlines/Facilities
Related Tools
Search
Advanced Search
Sequence Similarity Search
Structure Similarity Search
Chemical Similarity Search
Chemical Sketch Tool
Browse by Annotations
New Entries
Unreleased Entries
PDB Statistics
Visualize
Mol* (MolStar)
Sequence Annotations Viewer
Genome View
Analyze
Pairwise Structure Alignment
Symmetry Resources in the PDB
Structure Quality
Grouping Structures
PDB Citation MeSH Network Explorer
PDB Statistics
EPPIC Biological Assemblies
External Data and Resources
Integrated Resources
Additional Resources
Download
Coordinates and Experimental Data
Sequences
Ligands
File Download Services
Web APIs
Learn
Training Courses
Guide to PDB Data
Molecule of the Month
Educational Resources
Curricula
Browse
News
SciArt Galleries
Irving Geis
David Goodsell
About
Contact Us
About RCSB PDB
Vision and Mission
Citation, Usage, Privacy Policies, Logo
News
PDB History
PDB50
User Community
Publications
RCSB PDB Advisory Committee
Team Members
Diversity, Equity, Inclusion, and Access
Service Status
Careers
COVID-19
227,111
Structures from the PDB
1,068,577
Computed Structure Models (CSM)
Navigation Tabs
Structure Summary
Structure
Annotations
Experiment
Sequence
Genome
Versions
Display Files
FASTA Sequence
mmCIF Format
mmCIF Format (Header)
PDB Format
PDB Format (Header)
Download Files
FASTA Sequence
PDBx/mmCIF Format
PDBx/mmCIF Format (gz)
BinaryCIF Format (gz)
PDB Format
PDB Format (gz)
PDBML/XML Format (gz)
Structure Factors (CIF)
Structure Factors (CIF - gz)
Validation Full PDF
Validation (XML - gz)
Validation (CIF - gz)
Validation 2fo-fc coefficients (CIF - gz)
Validation fo-fc coefficients (CIF - gz)
Biological Assembly 1 (CIF - gz)
Biological Assembly 1 (PDB - gz)
Data API
6M1V
Crystal structure of post fusion core of 2019-nCoV S2 subunit
External Resource: Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
Spike protein S2,Spike protein S2
protein binding
binding
molecular function activator activity
signaling receptor binding
molecular function regulator activity
signaling receptor regulator activity
receptor ligand activity
signaling receptor activator activity
host cell surface binding
host cell surface receptor binding
structural constituent of virion
structural molecule activity
identical protein binding
viral process
fusion of virus membrane with host endosome membrane
membrane fusion involved in viral entry into host cell
membrane organization
cellular component organization
membrane fusion
cellular process
cellular component organization or biogenesis
import into cell
receptor-mediated endocytosis of virus by host cell
biological process involved in interspecies interaction between organisms
transport
viral life cycle
establishment of localization
viral process
fusion of virus membrane with host endosome membrane
membrane fusion involved in viral entry into host cell
membrane organization
cellular component organization
membrane fusion
cellular process
cellular component organization or biogenesis
import into cell
receptor-mediated endocytosis of virus by host cell
biological process involved in interspecies interaction between organisms
transport
viral life cycle
establishment of localization
biological process involved in interaction with host
vesicle-mediated transport
biological process involved in symbiotic interaction
localization
symbiont entry into host cell
symbiont entry into host
endocytosis involved in viral entry into host cell
endocytosis
receptor-mediated endocytosis
transport of virus
symbiont-mediated perturbation of host defense response
suppression by virus of host tetherin activity
response to host defenses
response to stimulus
response to other organism
response to defenses of other organism
modulation by virus of host process
response to external stimulus
virus-mediated perturbation of host defense response
response to biotic stimulus
symbiont-mediated perturbation of host process
response to host
response to external biotic stimulus
modulation of process of another organism
modulation by virus of host cellular process
virion attachment to host cell
receptor-mediated virion attachment to host cell
adhesion of symbiont to host cell
adhesion of symbiont to host
viral gene expression
viral translation
fusion of virus membrane with host plasma membrane
regulation of biological process
positive regulation of viral life cycle
positive regulation of viral process
biological regulation
positive regulation of biological process
modulation by symbiont of entry into host
regulation of viral entry into host cell
regulation of viral life cycle
regulation of viral process
positive regulation of viral entry into host cell
positive regulation by symbiont of entry into host
regulation of biological process involved in symbiotic interaction
symbiont-mediated perturbation of host immune response
symbiont-mediated perturbation of host defenses
symbiont-mediated suppression of host immune response
symbiont-mediated suppression of host innate immune response
response to host immune response
symbiont-mediated suppression of host defenses
symbiont-mediated perturbation of host innate immune response
entry receptor-mediated virion attachment to host cell
Less
membrane
cellular anatomical entity
host extracellular space
host cellular component
cell periphery
plasma membrane
host intracellular membrane-bounded organelle
host intracellular part
host cell membrane
host cell cytoplasm part
host intracellular organelle
host cell endoplasmic reticulum-Golgi intermediate compartment membrane
host cell endoplasmic reticulum-Golgi intermediate compartment
host cell cytoplasm
membrane
cellular anatomical entity
host extracellular space
host cellular component
cell periphery
plasma membrane
host intracellular membrane-bounded organelle
host intracellular part
host cell membrane
host cell cytoplasm part
host intracellular organelle
host cell endoplasmic reticulum-Golgi intermediate compartment membrane
host cell endoplasmic reticulum-Golgi intermediate compartment
host cell cytoplasm
host cell part
host intracellular region
host cell plasma membrane
virion component
virion membrane
viral membrane
viral envelope
host cell surface
Less
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
IPR044873
Spike glycoprotein S2, coronavirus, heptad repeat 1
Domain
A
IPR044366
Spike (S) protein S1 subunit, receptor-binding domain, SARS-CoV-2
Domain
A
IPR018548
Spike (S) protein S1 subunit, receptor-binding domain, betacoronavirus
Domain
A
IPR044341
Spike (S) protein S1 subunit, N-terminal domain, SARS-CoV-like
Domain
A
IPR032500
Spike glycoprotein S1, N-terminal domain, betacoronavirus-like
Domain
A
IPR042578
Spike glycoprotein, betacoronavirus
Family
A
IPR036326
Spike S1 subunit, receptor binding domain superfamily, betacoronavirus
Homologous Superfamily
A
IPR043002
Spike glycoprotein, N-terminal domain superfamily
Homologous Superfamily
A
IPR044874
Spike glycoprotein S2, coronavirus, heptad repeat 2
Domain
A
IPR043473
Spike glycoprotein S2 superfamily, coronavirus
Homologous Superfamily
A
IPR043607
Coronavirus spike glycoprotein S1, C-terminal
Domain
A
IPR002552
Spike glycoprotein S2, coronavirus
Domain
About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy
Support
Contact Us
Help
Website FAQ
Glossary
Service Status
RCSB PDB is hosted by
RCSB PDB is a member of the
RCSB Partners
Nucleic Acid Knowledgebase
wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB