6NV8

Perdeuterated tyrosine phenol-lyase from Citrobacter freundii complexed with an aminoacrylate intermediate formed from S-ethyl-L-cysteine and 4-hydroxypyridine

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6nv8a_	Alpha and beta proteins (a/b)	PLP-dependent transferase-like	PLP-dependent transferases	Beta-eliminating lyases	Tyrosine phenol-lyase	(Citrobacter freundii ) [TaxId: 546 ],	SCOPe (2.08)
B	d6nv8b_	Alpha and beta proteins (a/b)	PLP-dependent transferase-like	PLP-dependent transferases	Beta-eliminating lyases	Tyrosine phenol-lyase	(Citrobacter freundii ) [TaxId: 546 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	PLP-dependent transferases	8032351	3000954	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PLP-dependent transferases	8032351	3000954	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Beta_elim_lyase	e6nv8A1	A: a+b two layers	X: C-terminal domain in some PLP-dependent transferases (From Topology)	H: C-terminal domain in some PLP-dependent transferases (From Topology)	T: C-terminal domain in some PLP-dependent transferases	F: Beta_elim_lyase	ECOD (1.6)
A	Aminotran_5_N	e6nv8A2	A: a/b three-layered sandwiches	X: PLP-dependent transferases (From Topology)	H: PLP-dependent transferases (From Topology)	T: PLP-dependent transferases	F: Aminotran_5_N	ECOD (1.6)
B	Beta_elim_lyase	e6nv8B2	A: a+b two layers	X: C-terminal domain in some PLP-dependent transferases (From Topology)	H: C-terminal domain in some PLP-dependent transferases (From Topology)	T: C-terminal domain in some PLP-dependent transferases	F: Beta_elim_lyase	ECOD (1.6)
B	Aminotran_5_N	e6nv8B1	A: a/b three-layered sandwiches	X: PLP-dependent transferases (From Topology)	H: PLP-dependent transferases (From Topology)	T: PLP-dependent transferases	F: Aminotran_5_N	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01212	Beta-eliminating lyase (Beta_elim_lyase)	Beta-eliminating lyase	-	Domain
B	PF01212	Beta-eliminating lyase (Beta_elim_lyase)	Beta-eliminating lyase	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Tyrosine phenol-lyase	tyrosine phenol-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process aromatic amino acid metabolic process oxoacid metabolic process cellular metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process organic acid metabolic process alpha-amino acid metabolic process L-amino acid metabolic process proteinogenic amino acid metabolic process metabolic process small molecule metabolic process cellular process erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process aromatic amino acid metabolic process oxoacid metabolic process cellular metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process organic acid metabolic process alpha-amino acid metabolic process L-amino acid metabolic process proteinogenic amino acid metabolic process metabolic process small molecule metabolic process cellular process tyrosine metabolic process	-
B	Tyrosine phenol-lyase	tyrosine phenol-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process aromatic amino acid metabolic process oxoacid metabolic process cellular metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process organic acid metabolic process alpha-amino acid metabolic process L-amino acid metabolic process proteinogenic amino acid metabolic process metabolic process small molecule metabolic process cellular process erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process aromatic amino acid metabolic process oxoacid metabolic process cellular metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process organic acid metabolic process alpha-amino acid metabolic process L-amino acid metabolic process proteinogenic amino acid metabolic process metabolic process small molecule metabolic process cellular process tyrosine metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR015424	Pyridoxal phosphate-dependent transferase	Homologous Superfamily
A	IPR001597	Aromatic amino acid beta-eliminating lyase/threonine aldolase	Domain
A	IPR018176	Tryptophanase, conserved site	Conserved Site
A	IPR015421	Pyridoxal phosphate-dependent transferase, major domain	Homologous Superfamily
A	IPR015422	Pyridoxal phosphate-dependent transferase, small domain	Homologous Superfamily
A	IPR013441	Tyrosine phenol-lyase	Family
A	IPR011166	Beta-eliminating lyase family	Family
B	IPR015424	Pyridoxal phosphate-dependent transferase	Homologous Superfamily
B	IPR001597	Aromatic amino acid beta-eliminating lyase/threonine aldolase	Domain
B	IPR018176	Tryptophanase, conserved site	Conserved Site
B	IPR015421	Pyridoxal phosphate-dependent transferase, major domain	Homologous Superfamily
B	IPR015422	Pyridoxal phosphate-dependent transferase, small domain	Homologous Superfamily
B	IPR013441	Tyrosine phenol-lyase	Family
B	IPR011166	Beta-eliminating lyase family	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B	LLP	Parent Component: LYS RESID: AA0119 PSI-MOD : N6-pyridoxal phosphate-L-lysine MOD:00128

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.