6Z2K
The structure of the tetrameric HDAC1/MIDEAS/DNTTIP1 MiDAC deacetylase complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth C] | SCOP2B Superfamily | Arginase/deacetylase-like | 8088480 | 3000260 | SCOP2B (2022-06-29) |
B [auth E] | SCOP2B Superfamily | Arginase/deacetylase-like | 8088480 | 3000260 | SCOP2B (2022-06-29) |
C [auth K] | SCOP2B Superfamily | Arginase/deacetylase-like | 8088480 | 3000260 | SCOP2B (2022-06-29) |
D [auth I] | SCOP2B Superfamily | Arginase/deacetylase-like | 8088480 | 3000260 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | Hist_deacetyl | e6z2kC1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Arginase/deacetylase | F: Hist_deacetyl | ECOD (1.6) |
B [auth E] | Hist_deacetyl | e6z2kE1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Arginase/deacetylase | F: Hist_deacetyl | ECOD (1.6) |
C [auth K] | Hist_deacetyl | e6z2kK1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Arginase/deacetylase | F: Hist_deacetyl | ECOD (1.6) |
D [auth I] | Hist_deacetyl | e6z2kI1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Arginase/deacetylase | F: Hist_deacetyl | ECOD (1.6) |
E [auth A] | KOG4801_1st | e6z2kA1 | A: alpha duplicates or obligate multimers | X: DNTTIP1 dimerisation domain (From Topology) | H: DNTTIP1 dimerisation domain (From Topology) | T: DNTTIP1 dimerisation domain | F: KOG4801_1st | ECOD (1.6) |
F [auth B] | KOG4801_1st | e6z2kB1 | A: alpha duplicates or obligate multimers | X: DNTTIP1 dimerisation domain (From Topology) | H: DNTTIP1 dimerisation domain (From Topology) | T: DNTTIP1 dimerisation domain | F: KOG4801_1st | ECOD (1.6) |
G | KOG4801_1st | e6z2kG1 | A: alpha duplicates or obligate multimers | X: DNTTIP1 dimerisation domain (From Topology) | H: DNTTIP1 dimerisation domain (From Topology) | T: DNTTIP1 dimerisation domain | F: KOG4801_1st | ECOD (1.6) |
H | KOG4801_1st | e6z2kH1 | A: alpha duplicates or obligate multimers | X: DNTTIP1 dimerisation domain (From Topology) | H: DNTTIP1 dimerisation domain (From Topology) | T: DNTTIP1 dimerisation domain | F: KOG4801_1st | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], B [auth E], C [auth K], D [auth I] | PF00850 | Histone deacetylase domain (Hist_deacetyl) | Histone deacetylase domain | Histones can be reversibly acetylated on several lysine residues. Regulation of transcription is caused in part by this mechanism. Histone deacetylases catalyse the removal of the acetyl group. Histone deacetylases are related to other proteins [1]. ... | Domain |
I [auth F], J [auth D], K [auth L], L [auth J] | PF01448 | ELM2 domain (ELM2) | ELM2 domain | - | Family |
E [auth A], F [auth B], G, H | PF18192 | DNTTIP1 dimerisation domain (DNTTIP1_dimer) | DNTTIP1 dimerisation domain | This is the N-terminal domain of DNTTIP1, a protein that forms part of a novel histone deacetylase complex present in Homo sapiens. Histone deacetylase complexes comprise DNTTIP1, histone deacetylase (HDAC) and the repressor protein MIDEAS. The acety ... | Domain |