Structure of a human ABCE1-bound 43S pre-initiation complex - State III
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B [auth p] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8053212 | 3002166 | SCOP2B (2022-06-29) |
| D [auth Q] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053143 | 3000068 | SCOP2B (2022-06-29) |
| E [auth q] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8052755 | 3001473 | SCOP2B (2022-06-29) |
| E [auth q] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052757 | 3000334 | SCOP2B (2022-06-29) |
| E [auth q] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052756 | 3000135 | SCOP2B (2022-06-29) |
| G [auth r] | SCOP2B Superfamily | GS N-terminal domain-like | 8053171 | 3000408 | SCOP2B (2022-06-29) |
| I [auth t] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8053077 | 3000433 | SCOP2B (2022-06-29) |
| K [auth n] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052717 | 3000135 | SCOP2B (2022-06-29) |
| K [auth n] | SCOP2B Superfamily | Ribosomal S17 N-terminal domain-like | 8052715 | 3002138 | SCOP2B (2022-06-29) |
| M [auth y] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053139 | 3000068 | SCOP2B (2022-06-29) |
| Q [auth T] | SCOP2B Superfamily | Ribosomal protein S30e-like | 8053453 | 3002190 | SCOP2B (2022-06-29) |
| T [auth b] | SCOP2B Superfamily | Prokaryotic type KH domain (KH-domain type II) | 8043545 | 3001043 | SCOP2B (2022-06-29) |
| Y [auth g] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082685 | 3000100 | SCOP2B (2022-06-29) |
| Z [auth k] | SCOP2B Superfamily | S13-like H2TH domain | 8101555 | 3000053 | SCOP2B (2022-06-29) |
| AA [auth x] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8089318 | 3000034 | SCOP2B (2022-06-29) |
| BA [auth h] | SCOP2B Superfamily | Ribosomal protein S10 | 8098806 | 3001336 | SCOP2B (2022-06-29) |
| DA [auth S] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8063426 | 3000135 | SCOP2B (2022-06-29) |
| EA [auth l] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052572 | 3000068 | SCOP2B (2022-06-29) |
| HA [auth i] | SCOP2B Superfamily | Translational machinery components | 8098844 | 3000571 | SCOP2B (2022-06-29) |
| LA [auth B] | SCOP2B Superfamily | RNA-binding domain, RBD | 8073934 | 3000110 | SCOP2B (2022-06-29) |
| NA [auth C] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8093051 | 3000034 | SCOP2B (2022-06-29) |
| NA [auth C] | SCOP2B Superfamily | TPR-like | 8093044 | 3001345 | SCOP2B (2022-06-29) |
| OA [auth E] | SCOP2B Superfamily | TPR-like | 8091483 | 3001345 | SCOP2B (2022-06-29) |
| OA [auth E] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8091486 | 3000034 | SCOP2B (2022-06-29) |
| PA [auth F] | SCOP2B Superfamily | EIF3 subunit F C-terminal domain-like | 8053241 | 3002167 | SCOP2B (2022-06-29) |
| PA [auth F] | SCOP2B Superfamily | JAB1/MPN domain-like | 8053242 | 3001105 | SCOP2B (2022-06-29) |
| QA [auth H] | SCOP2B Superfamily | JAB1/MPN domain-like | 8053284 | 3001105 | SCOP2B (2022-06-29) |
| RA [auth K] | SCOP2B Superfamily | ARM repeat-like | 8002866 | 3000116 | SCOP2B (2022-06-29) |
| RA [auth K] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8002864 | 3000034 | SCOP2B (2022-06-29) |
| BB [auth Z] | SCOP2B Superfamily | eIF1-like | 8035729 | 3001441 | SCOP2B (2022-06-29) |
| ZA [auth O] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8042151 | 3000135 | SCOP2B (2022-06-29) |
| ZA [auth O] | SCOP2B Superfamily | eIF2alpha middle domain-like | 8042150 | 3001761 | SCOP2B (2022-06-29) |
| ZA [auth O] | SCOP2B Superfamily | eIF-2-alpha, C-terminal domain | 8038509 | 3001618 | SCOP2B (2022-06-29) |
| CA [auth P] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8090992 | 3000034 | SCOP2B (2022-06-29) |
| W [auth v] | SCOP2B Superfamily | L30e-like | 8063978 | 3001739 | SCOP2B (2022-06-29) |
| V [auth u] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8055714 | 3000034 | SCOP2B (2022-06-29) |
| U [auth e] | SCOP2B Superfamily | Ribosomal protein S7 | 8066003 | 3000799 | SCOP2B (2022-06-29) |
| N [auth D] | SCOP2B Superfamily | Ribosomal protein S8 | 8095469 | 3000709 | SCOP2B (2022-06-29) |
| L [auth m] | SCOP2B Superfamily | Homeodomain-like | 8052958 | 3000001 | SCOP2B (2022-06-29) |
| L [auth m] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8052959 | 3001284 | SCOP2B (2022-06-29) |
| A [auth a] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8052791 | 3001397 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B [auth p] | e7a09p1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| C [auth d] | e7a09d1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| D [auth Q] | e7a09Q1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| E [auth q] | e7a09q1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| G [auth r] | e7a09r1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| H [auth s] | e7a09s1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| I [auth t] | e7a09t1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| J [auth c] | e7a09c1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| K [auth n] | e7a09n1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| M [auth y] | e7a09y1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| O [auth z] | e7a09z1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| P [auth R] | e7a09R1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| Q [auth T] | e7a09T1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| T [auth b] | e7a09b1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| Y [auth g] | e7a09g1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| Z [auth k] | e7a09k1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| AA [auth x] | e7a09x1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| BA [auth h] | e7a09h1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| DA [auth S] | e7a09S1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| EA [auth l] | e7a09l1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| FA [auth U] | e7a09U1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| GA [auth V] | e7a09V1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| HA [auth i] | e7a09i1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| IA [auth j] | e7a09j1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| JA [auth G] | e7a09G1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| KA [auth I] | e7a09I1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| NA [auth C] | e7a09C01 | A: Rossmann-like | X: Rossmann-related | H: FAD/NAD(P)-binding domain | T: RF-1 | F: | ECOD (20:10:01) | |
| OA [auth E] | e7a09E1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: bCoV_S1_N | F: | ECOD (20:10:01) | |
| PA [auth F] | e7a09F1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| QA [auth H] | e7a09H1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| RA [auth K] | e7a09K1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| UA [auth J] | e7a09J1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| AB [auth Y] | e7a09Y1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| BB [auth Z] | e7a09Z1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| F [auth W] | e7a09W1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| ZA [auth O] | e7a09O1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| YA [auth 4] | e7a0941 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| CA [auth P] | e7a09P1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| X [auth o] | e7a09o1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| W [auth v] | e7a09v1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| V [auth u] | e7a09u1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| U [auth e] | e7a09e1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| S [auth w] | e7a09w1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| N [auth D] | e7a09D1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| L [auth m] | e7a09m1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) | |
| A [auth a] | e7a09a1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Ldh_1_C | F: | ECOD (20:10:01) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| D [auth Q] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
| D [auth Q] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
| P [auth R] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
| Q [auth T] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
| FA [auth U] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |
| FA [auth U] | PF01599 | Ribosomal protein S27a (Ribosomal_S27) | Ribosomal protein S27a | This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ... | Domain |
| GA [auth V] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
| GA [auth V] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| JA [auth G] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| JA [auth G] | PF01176 | Translation initiation factor 1A / IF-1 (eIF-1a) | Translation initiation factor 1A / IF-1 | This family includes both the eukaryotic translation factor eIF-1A and the bacterial translation initiation factor IF-1. | Domain |
| KA [auth I] | PF24805 | EIF3I (EIF3I) | EIF3I | - | Repeat |
| KA [auth I] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| LA [auth B] | PF08662 | Eukaryotic translation initiation factor eIF2A (eIF2A) | Eukaryotic translation initiation factor eIF2A | - | Repeat |
| LA [auth B] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| LA [auth B] | PF00076 | RNA recognition motif (RRM_1) | RNA recognition motif | The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ... | Domain |
| LA [auth B] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| MA [auth A] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| MA [auth A] | PF16122 | 40S ribosomal protein SA C-terminus (40S_SA_C) | 40S ribosomal protein SA C-terminus | - | Family |
| MA [auth A] | PF22591 | eIF3a, PCI domain, TPR-like region (eIF3a_PCI_TPR-like) | eIF3a, PCI domain, TPR-like region | - | Repeat |
| MA [auth A] | PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain |
| NA [auth C] | PF26569 | EIF3CL-like, C-terminal domain (EIF3CL_C) | EIF3CL-like, C-terminal domain | This domain is found at the C-terminal end of human Eukaryotic translation initiation factor 3 subunit C-like protein (EIF3CL) and similar proteins. EIF3CL is a component of the eukaryotic translation initiation factor 3 (eIF-3) complex. This domain ... | Domain |
| NA [auth C] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| NA [auth C] | PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain |
| NA [auth C] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| OA [auth E] | PF09440 | eIF3 subunit 6 N terminal domain (eIF3_N) | eIF3 subunit 6 N terminal domain | This is the N terminal domain of subunit 6 translation initiation factor eIF3. | Domain |
| OA [auth E] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| OA [auth E] | PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain |
| OA [auth E] | PF21357 | Eukaryotic translation initiation factor 3 subunit E, C-terminal (EIF3E_C) | Eukaryotic translation initiation factor 3 subunit E, C-terminal | Eukaryotic translation initiation factor 3 subunit E (EIF3E) is a component of the EIF3 complex, involved in protein synthesis. This is the C-terminal helical tail of EIF3E [1]. | Domain |
| PA [auth F] | PF13012 | Maintenance of mitochondrial structure and function (MitMem_reg) | Maintenance of mitochondrial structure and function | - | Family |
| QA [auth H] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| QA [auth H] | PF19445 | C-terminal region of eIF3h (eIF3h_C) | C-terminal region of eIF3h | - | Family |
| RA [auth K] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| RA [auth K] | PF10075 | CSN8/PSMD8/EIF3K family (CSN8_PSD8_EIF3K) | CSN8/PSMD8/EIF3K family | - | Family |
| SA [auth L] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| TA [auth M] | PF18005 | eIF3 subunit M, C-terminal helix (eIF3m_C_helix) | eIF3 subunit M, C-terminal helix | This is the C-terminal helix domain found in Eukaryotic translation initiation factor 3 subunit M (eIF3m). In mammalian eIF3a, the C-terminal helix following the PCI domain is involved in interactions with other core subunits [1]. | Domain |
| TA [auth M] | PF01399 | PCI domain (PCI) | PCI domain | This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) [1]. | Domain |
| TA [auth M] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| UA [auth J] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| UA [auth J] | PF04068 | Possible Fer4-like domain in RNase L inhibitor, RLI (Fer4_RLI) | Possible Fer4-like domain in RNase L inhibitor, RLI | - | Family |
| UA [auth J] | PF00037 | 4Fe-4S binding domain (Fer4) | 4Fe-4S binding domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. | Domain |
| UA [auth J] | PF00005 | ABC transporter (ABC_tran) | ABC transporter | ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ... | Domain |
| WA [auth X] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
| AB [auth Y] | PF01249 | Ribosomal protein S21e (Ribosomal_S21e) | Ribosomal protein S21e | - | Family |
| AB [auth Y] | PF00009 | Elongation factor Tu GTP binding domain (GTP_EFTU) | Elongation factor Tu GTP binding domain | This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. | Domain |
| AB [auth Y] | PF03144 | Elongation factor Tu domain 2 (GTP_EFTU_D2) | Elongation factor Tu domain 2 | Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ... | Domain |
| AB [auth Y] | PF09173 | Initiation factor eIF2 gamma, C terminal (eIF2_C) | Initiation factor eIF2 gamma, C terminal | Members of this family, which are found in the initiation factors eIF2 and EF-Tu, adopt a structure consisting of a beta barrel with Greek key topology. They are required for formation of the ternary complex with GTP and initiator tRNA [1]. | Domain |
| BB [auth Z] | PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |
| BB [auth Z] | PF01253 | Translation initiation factor SUI1 (SUI1) | Translation initiation factor SUI1 | Domain | |
| F [auth W] | PF05162 | Ribosomal protein L41 (Ribosomal_L41) | Ribosomal protein L41 | - | Family |
| ZA [auth O] | PF07541 | Eukaryotic translation initiation factor 2 alpha subunit (EIF_2_alpha) | Eukaryotic translation initiation factor 2 alpha subunit | - | Family |
| ZA [auth O] | PF00575 | S1 RNA binding domain (S1) | S1 RNA binding domain | The S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure. | Domain |
| ZA [auth O] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| VA [auth N] | PF16205 | Ribosomal_S17 N-terminal (Ribosomal_S17_N) | Ribosomal_S17 N-terminal | - | Family |
| VA [auth N] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| VA [auth N] | PF05091 | Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) (eIF-3_zeta) | Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) | - | Family |
| N [auth D] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| N [auth D] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |














