7A65

Nanodisc reconstituted, drug-free human ABCB1 in complex with MRK16 Fab

External Resource: Annotation

Domain Annotation: ECOD Classification
IMGT Antibody Annotation
SAbDab Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	ABC_membrane	e7a65A4	A: alpha bundles	X: Type II ABC exporter transmembrane domain fold	H: Type I ABC exporter transmembrane domain fold (From Topology)	T: Type I ABC exporter transmembrane domain fold	F: ABC_membrane	ECOD (1.6)
A	ABC_tran_1	e7a65A1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: ABC_tran_1	ECOD (1.6)
B	C1-set_4	e7a65B1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: C1-set_4	ECOD (1.6)
B	V-set	e7a65B2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
C	C1-set_1	e7a65C2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: C1-set_1	ECOD (1.6)
C	V-set_12	e7a65C1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
B	Fab MRK16, anti-ABCB1	L-KAPPA	Mus musculus (house mouse)	IGKV1-11701, IGKJ101, IGKJ201, IGKC01, IGKC*02	V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA	IG	FAB-GAMMA-2A_KAPPA	IMGT (202446-0)
C	Fab MRK16, anti-ABCB1	VH-CH1	Mus musculus (house mouse)	IGHV5-903, IGHV5-9-501, IGHJ301, IGHG2A01, IGHG2A*02	V-DOMAIN VH, C-DOMAIN CH1	IG	FAB-GAMMA-2A_KAPPA	IMGT (202446-0)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
B	Light Chain	IGKV1	Kappa	multidrug resistance protein 1	SAbDab (2024-11-15)
C	Heavy Chain	IGHV5	-	multidrug resistance protein 1	SAbDab (2024-11-15)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00664	ABC transporter transmembrane region (ABC_membrane)	ABC transporter transmembrane region	-	Family
A	PF00005	ABC transporter (ABC_tran)	ABC transporter	ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ...	ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain Pfam:PF00664. These four domains may belong to a single polypeptide as in Swiss:P13569, or belong in different polypeptide chains.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Multidrug resistance protein 1	phosphatidylcholine transporter activity ATPase-coupled intramembrane lipid transporter activity lipid transporter activity intramembrane lipid transporter activity phosphatidylcholine floppase activity transporter activity floppase activity phospholipid transporter activity ATP-dependent activity sphingolipid floppase activity sphingolipid transporter activity ceramide floppase activity carboxylic acid transmembrane transporter activity organic acid transmembrane transporter activity phosphatidylcholine transporter activity ATPase-coupled intramembrane lipid transporter activity lipid transporter activity intramembrane lipid transporter activity phosphatidylcholine floppase activity transporter activity floppase activity phospholipid transporter activity ATP-dependent activity sphingolipid floppase activity sphingolipid transporter activity ceramide floppase activity carboxylic acid transmembrane transporter activity organic acid transmembrane transporter activity transmembrane transporter activity organic anion transmembrane transporter activity glycerophospholipid flippase activity flippase activity phosphatidylethanolamine flippase activity xenobiotic transmembrane transporter activity ABC-type transporter activity active transmembrane transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity ABC-type xenobiotic transporter activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ubiquitin protein ligase binding protein binding ubiquitin-like protein ligase binding enzyme binding efflux transmembrane transporter activity	response to stimulus response to chemical response to xenobiotic stimulus organic acid transport organic acid transmembrane transport transmembrane transport localization organic anion transport carboxylic acid transmembrane transport carboxylic acid transport transport cellular process establishment of localization export from cell response to stimulus response to chemical response to xenobiotic stimulus organic acid transport organic acid transmembrane transport transmembrane transport localization organic anion transport carboxylic acid transmembrane transport carboxylic acid transport transport cellular process establishment of localization export from cell export across plasma membrane membrane organization ceramide translocation nitrogen compound transport sphingolipid translocation biological regulation lipid localization lipid transport lipid translocation regulation of membrane lipid distribution cellular component organization ceramide transport amide transport macromolecule localization regulation of biological quality cellular component organization or biogenesis regulation of localization regulation of biological process regulation of transport regulation of monoatomic ion transport chloride transport monoatomic anion transport regulation of monoatomic anion transport monoatomic ion transport regulation of chloride transport inorganic anion transport transepithelial transport terpenoid transport isoprenoid transport stem cell proliferation cell population proliferation cellular response to stimulus cellular response to chemical stimulus cellular response to xenobiotic stimulus metabolic process xenobiotic metabolic process multicellular organismal process system process xenobiotic transport across blood-brain barrier xenobiotic transport vascular transport circulatory system process vascular process in circulatory system transport across blood-brain barrier cell cycle G2/M phase transition mitotic cell cycle process G2/M transition of mitotic cell cycle cell cycle phase transition cell cycle mitotic cell cycle cell cycle process mitotic cell cycle phase transition response to osmotic stress regulation of response to stimulus response to stress regulation of response to stress response to abiotic stimulus regulation of response to osmotic stress regulation of cellular process monoatomic ion transmembrane transport positive regulation of biological process regulation of transmembrane transporter activity regulation of monoatomic ion transmembrane transport regulation of transporter activity positive regulation of molecular function positive regulation of monoatomic ion transport monoatomic anion transmembrane transport positive regulation of transmembrane transport positive regulation of monoatomic ion transmembrane transport positive regulation of cellular process regulation of monoatomic ion transmembrane transporter activity positive regulation of anion channel activity regulation of monoatomic anion transmembrane transport regulation of anion channel activity positive regulation of anion transmembrane transport positive regulation of monoatomic anion transport regulation of molecular function regulation of transmembrane transport positive regulation of transport positive regulation of transporter activity positive regulation of ion transmembrane transporter activity xenobiotic export from cell xenobiotic detoxification by transmembrane export across the plasma membrane detoxification response to toxic substance phospholipid translocation phospholipid transport organophosphate ester transport	cellular anatomical structure membrane cell periphery apical part of cell plasma membrane plasma membrane region apical plasma membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space cellular anatomical structure membrane cell periphery apical part of cell plasma membrane plasma membrane region apical plasma membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle cell surface external side of apical plasma membrane side of membrane external side of plasma membrane intracellular anatomical structure cytoplasm
B	MRK16 Fab-fragment light chain	-	-	-
C	MRK16 Fab-fragment heavy chain	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR003439	ABC transporter-like, ATP-binding domain	Domain
A	IPR003593	AAA+ ATPase domain	Domain
A	IPR011527	ABC transporter type 1, transmembrane domain	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR017871	ABC transporter-like, conserved site	Conserved Site
A	IPR036640	ABC transporter type 1, transmembrane domain superfamily	Homologous Superfamily
A	IPR039421	Type 1 protein exporter	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P08183	non-small cell lung carcinoma inflammatory bowel disease 13 adrenal cortex carcinoma rheumatoid arthritis diffuse large B-cell lymphoma neutropenia ulcerative colitis neuroblastoma cancer bipolar disorder breast carcinoma Pain, Postoperative carcinoma peripheral neuropathy hematopoietic and lymphoid system neoplasm non-small cell lung carcinoma inflammatory bowel disease 13 adrenal cortex carcinoma rheumatoid arthritis diffuse large B-cell lymphoma neutropenia ulcerative colitis neuroblastoma cancer bipolar disorder breast carcinoma Pain, Postoperative carcinoma peripheral neuropathy hematopoietic and lymphoid system neoplasm colorectal cancer schizophrenia nervous system disorder cannabis dependence escherichia coli infection head and neck squamous cell carcinoma poisoning secondary Parkinson disease breast cancer epilepsy esophageal cancer Parkinson disease peripheral nervous system disease sarcomatoid carcinoma juvenile idiopathic arthritis kidney neoplasm tuberculosis pancreatic intraductal papillary-mucinous neoplasm gallbladder cancer acute coronary syndrome adrenal carcinoma childhood acute lymphoblastic leukemia hepatocellular carcinoma alopecia Prinzmetal angina hypertensive disorder interstitial lung disease autism benign neoplasm testicular cancer Kaposi's sarcoma toxic encephalopathy Langerhans cell histiocytosis breast disease opiate dependence leukopenia pancreatic ductal adenocarcinoma lung cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia gallbladder disease acute intermittent porphyria cholelithiasis colorectal carcinoma congenital heart disease psychiatric disorder depressive disorder inherited disease susceptibility atrial fibrillation neoplasm of esophagus kidney cancer drug-induced liver injury large cell medulloblastoma ovarian cancer undifferentiated carcinoma pancreatic intraductal papillary-mucinous carcinoma major depressive disorder malignant mesothelioma gestational trophoblastic neoplasm acute myeloid leukemia hematologic disease Hodgkins lymphoma mycosis fungoides Crohn disease psychotic disorder idiopathic pulmonary fibrosis neonatal abstinence syndrome

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Transmembrane	Alpha-helical polytopic	ABC transporters	Multidrug resistance exporter (MDR)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	ATP Binding Cassette (ABC) Transporters	P-Glycoprotein multi-drug transporter (ABCB1) in nanodiscs

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.