7KPB
Human TNF-alpha TNFR1 complex bound to conformationally selective antibody
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D [auth F] | SCOP2B Superfamily | TNF receptor-like | 8038879 | 3000971 | SCOP2B (2022-06-29) |
D [auth F] | SCOP2B Superfamily | TNF receptor-like | 8038880 | 3000971 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | TNF receptor-like | 8038879 | 3000971 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | TNF receptor-like | 8038880 | 3000971 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | TNF-like | 8041219 | 3000061 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | TNF-like | 8041219 | 3000061 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | TNF-like | 8041219 | 3000061 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth F] | TNFR_c6_2 | e7kpbF2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: TNFR_c6_2 | ECOD (1.6) |
D [auth F] | TNFR_c6_1 | e7kpbF1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: TNFR_c6_1 | ECOD (1.6) |
E | TNFR_c6_2 | e7kpbE3 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: TNFR_c6_2 | ECOD (1.6) |
E | TNFR_c6_1 | e7kpbE1 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: TNF receptor-like | F: TNFR_c6_1 | ECOD (1.6) |
B | TNF | e7kpbB1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
C | TNF | e7kpbC1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
A | TNF | e7kpbA1 | A: beta sandwiches | X: jelly-roll | H: TNF-like (From Topology) | T: TNF-like | F: TNF | ECOD (1.6) |
F [auth L] | C1-set_4 | e7kpbL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
F [auth L] | V-set | e7kpbL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
G [auth H] | C1-set_1 | e7kpbH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
G [auth H] | V-set_12 | e7kpbH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
F [auth L] | Light Chain | IGKV12 | Kappa | tumor necrosis factor | tumor necrosis factor | SAbDab (2024-11-08) |
G [auth H] | Heavy Chain | IGHV5 | - | tumor necrosis factor | tumor necrosis factor | SAbDab (2024-11-08) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
D [auth F], E | PF00020 | TNFR/NGFR cysteine-rich region (TNFR_c6) | TNFR/NGFR cysteine-rich region | - | Domain |
PF00229 | TNF(Tumour Necrosis Factor) family (TNF) | TNF(Tumour Necrosis Factor) family | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
D [auth F], E | IPR033993 | Tumor necrosis factor receptor 1A, N-terminal | Domain |
D [auth F], E | IPR052493 | Tumor necrosis factor receptor superfamily member 1A | Family |
D [auth F], E | IPR011029 | Death-like domain superfamily | Homologous Superfamily |
D [auth F], E | IPR020419 | Tumour necrosis factor receptor 1A | Family |
D [auth F], E | IPR000488 | Death domain | Domain |
D [auth F], E | IPR001368 | TNFR/NGFR cysteine-rich region | Domain |
D [auth F], E | IPR033994 | Tumor necrosis factor receptor 1A, death domain | Domain |
IPR008983 | Tumour necrosis factor-like domain superfamily | Homologous Superfamily | |
IPR006053 | Tumour necrosis factor | Family | |
IPR002959 | Tumour necrosis factor alpha | Family | |
IPR021184 | Tumour necrosis factor, conserved site | Conserved Site | |
IPR006052 | Tumour necrosis factor domain | Domain |