Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth B]CDC48_Ne7mdmB3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: CDC48_NECOD (1.6)
A [auth B]CDC48e7mdmB6 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
A [auth B]Vps4_C_Ce7mdmB4 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: Vps4_C_CECOD (1.6)
A [auth B]CDC48_2e7mdmB5 A: a+b two layersX: Cdc48 domain 2-like (From Topology)H: Cdc48 domain 2-like (From Topology)T: Cdc48 domain 2-likeF: CDC48_2ECOD (1.6)
A [auth B]Sigma54_activate7mdmB1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
B [auth C]CDC48_Ne7mdmC3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: CDC48_NECOD (1.6)
B [auth C]CDC48e7mdmC6 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
B [auth C]Vps4_C_Ce7mdmC4 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: Vps4_C_CECOD (1.6)
B [auth C]CDC48_2e7mdmC5 A: a+b two layersX: Cdc48 domain 2-like (From Topology)H: Cdc48 domain 2-like (From Topology)T: Cdc48 domain 2-likeF: CDC48_2ECOD (1.6)
B [auth C]Sigma54_activate7mdmC1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
C [auth D]CDC48_Ne7mdmD3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: CDC48_NECOD (1.6)
C [auth D]CDC48e7mdmD6 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
C [auth D]Vps4_C_Ce7mdmD4 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: Vps4_C_CECOD (1.6)
C [auth D]CDC48_2e7mdmD5 A: a+b two layersX: Cdc48 domain 2-like (From Topology)H: Cdc48 domain 2-like (From Topology)T: Cdc48 domain 2-likeF: CDC48_2ECOD (1.6)
C [auth D]Sigma54_activate7mdmD1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
D [auth E]CDC48_Ne7mdmE3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: CDC48_NECOD (1.6)
D [auth E]CDC48e7mdmE6 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
D [auth E]Vps4_C_Ce7mdmE4 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: Vps4_C_CECOD (1.6)
D [auth E]CDC48_2e7mdmE5 A: a+b two layersX: Cdc48 domain 2-like (From Topology)H: Cdc48 domain 2-like (From Topology)T: Cdc48 domain 2-likeF: CDC48_2ECOD (1.6)
D [auth E]Sigma54_activate7mdmE1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
E [auth A]CDC48_Ne7mdmA3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: CDC48_NECOD (1.6)
E [auth A]CDC48e7mdmA6 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
E [auth A]Vps4_C_Ce7mdmA4 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: Vps4_C_CECOD (1.6)
E [auth A]CDC48_2e7mdmA5 A: a+b two layersX: Cdc48 domain 2-like (From Topology)H: Cdc48 domain 2-like (From Topology)T: Cdc48 domain 2-likeF: CDC48_2ECOD (1.6)
E [auth A]Sigma54_activate7mdmA1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)
FCDC48e7mdmF4 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
FVps4_C_Ce7mdmF1 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: Vps4_C_CECOD (1.6)
FSigma54_activate7mdmF3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02933Cell division protein 48 (CDC48), domain 2 (CDC48_2)Cell division protein 48 (CDC48), domain 2This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...Domain
PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
PF02359Cell division protein 48 (CDC48), N-terminal domain (CDC48_N)Cell division protein 48 (CDC48), N-terminal domainThis domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Transitional endoplasmic reticulum ATPase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR003959ATPase, AAA-type, coreDomain
IPR005938AAA ATPase, CDC48 familyFamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR029067CDC48 domain 2-like superfamilyHomologous Superfamily
IPR003338CDC48, N-terminal subdomainDomain
IPR004201CDC48, domain 2Domain
IPR009010Aspartate decarboxylase-like domain superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR041569AAA ATPase, AAA+ lid domainDomain
IPR050168AAA ATPase domain-containing proteinFamily
IPR003960ATPase, AAA-type, conserved siteConserved Site

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP55072