7OF0 | pdb_00007of0

Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
DB [auth w]d7of0w_ All alpha proteins Acyl carrier protein-like ACP-like automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
BB [auth u]d7of0u_ Alpha and beta proteins (a+b) Nucleotidyltransferase Nucleotidyltransferase automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BB [auth u]SCOP2B SuperfamilyNucleotidyltransferase-like 8100396 3000129 SCOP2B (2022-06-29)
E [auth 4]SCOP2B SuperfamilyRibosomal protein L36 8083324 3001346 SCOP2B (2022-06-29)
Y [auth O]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8033689 3000995 SCOP2B (2022-06-29)
V [auth L]SCOP2B Superfamily50S Ribosomal protein L14-like 8072072 3000433 SCOP2B (2022-06-29)
U [auth K]SCOP2B SuperfamilyRibosomal protein L13 8100460 3001134 SCOP2B (2022-06-29)
B [auth 1]SCOP2B SuperfamilyZn-binding ribosomal proteins 8075050 3001320 SCOP2B (2022-06-29)
P [auth F]SCOP2B SuperfamilyRibosomal protein L4 8080706 3001146 SCOP2B (2022-06-29)
J [auth 9]SCOP2B SuperfamilyMitochondrial ribosomal protein L27-like 8053893 3002240 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
F [auth 5]Acetyltransf_1e7of051 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
X [auth N]Acetyltransf_1e7of0N1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
BA [auth R]Ribosomal_L12_Ne7of0R1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L12_NECOD (v294.1)
DA [auth T]Acetyltransf_1e7of0T1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
GA [auth W]Ribosomal_L12_Ne7of0W1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L12_NECOD (v294.1)
IA [auth Y]Acetyltransf_1e7of0Y1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
KA [auth a]Ribosomal_L12_Ne7of0a1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L12_NECOD (v294.1)
PA [auth f]Acetyltransf_1e7of0f1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
VA [auth m]Ribosomal_L12_Ne7of0m1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L12_NECOD (v294.1)
XA [auth p]Acetyltransf_1e7of0p1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
YA [auth q]Acetyltransf_1e7of0q1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
CB [auth v]Acetyltransf_1e7of0v1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
I [auth 8]Acetyltransf_1e7of081 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
H [auth 7]Acetyltransf_1e7of071 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
G [auth 6]Acetyltransf_1e7of061 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
DB [auth w]Acetyltransf_1e7of0w1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
BB [auth u]Acetyltransf_1e7of0u1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
AB [auth s]Acetyltransf_1e7of0s1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
ZA [auth r]Acetyltransf_1e7of0r1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
E [auth 4]Acetyltransf_1e7of041 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
WA [auth o]Ribosomal_L12_Ne7of0o1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L12_NECOD (v294.1)
UA [auth k]Acetyltransf_1e7of0k1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
TA [auth j]Acetyltransf_1e7of0j1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
SA [auth i]Acetyltransf_1e7of0i1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
RA [auth h]Abhydrolase_1e7of0h1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: Abhydrolase_1ECOD (v294.1)
QA [auth g]Acetyltransf_1e7of0g1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
OA [auth e]Acetyltransf_1e7of0e1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
NA [auth d]Acetyltransf_1e7of0d1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
D [auth 3]Abhydrolase_1e7of031 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: Abhydrolase_1ECOD (v294.1)
MA [auth c]Acetyltransf_1e7of0c1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
LA [auth b]Acetyltransf_1e7of0b1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
JA [auth Z]Ribosomal_L12_Ne7of0Z1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L12_NECOD (v294.1)
HA [auth X]Acetyltransf_1e7of0X1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
EA [auth U]Acetyltransf_1e7of0U1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
C [auth 2]Acetyltransf_1e7of021 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
CA [auth S]Acetyltransf_1e7of0S1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
AA [auth Q]Acetyltransf_1e7of0Q1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
Z [auth P]Acetyltransf_1e7of0P1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
Y [auth O]Acetyltransf_1e7of0O1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
W [auth M]Acetyltransf_1e7of0M1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
V [auth L]Acetyltransf_1e7of0L1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
U [auth K]Acetyltransf_1e7of0K1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
T [auth J]Acetyltransf_1e7of0J1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
B [auth 1]Acetyltransf_1e7of011 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
S [auth I]Ribosomal_L12_Ne7of0I1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L12_NECOD (v294.1)
R [auth H]Acetyltransf_1e7of0H1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
Q [auth G]Acetyltransf_1e7of0G1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
P [auth F]Acetyltransf_1e7of0F1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
O [auth E]Acetyltransf_1e7of0E1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
N [auth D]Acetyltransf_1e7of0D1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
M [auth C]Ribosomal_L12_Ne7of0C1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Ribosomal_L12_NECOD (v294.1)
J [auth 9]Acetyltransf_1e7of091 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)
A [auth 0]Acetyltransf_1e7of001 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Acetyltransf_1ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
G [auth 6]3.90.280.10 Alpha Beta Alpha-Beta Complex Phosphatidylethanolamine-binding Protein PEBP-likeCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F [auth 5]PF07147Mitochondrial 28S ribosomal protein S30 (PDCD9) (PDCD9)Mitochondrial 28S ribosomal protein S30 (PDCD9)- Family
X [auth N]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
BA [auth R]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
BA [auth R]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
DA [auth T]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
GA [auth W]PF00550Phosphopantetheine attachment site (PP-binding)Phosphopantetheine attachment siteA 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ...A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Swiss:P19828 has the attachment serine replaced by an alanine.
Domain
IA [auth Y]PF06984Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47)Mitochondrial 39-S ribosomal protein L47 (MRP-L47)- Family
G [auth 6]PF01161Phosphatidylethanolamine-binding protein (PBP)Phosphatidylethanolamine-binding proteinDomain
E [auth 4]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain
D [auth 3]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
JA [auth Z]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
HA [auth X]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
FA [auth V]PF05347Complex 1 protein (LYR family) (Complex1_LYR)Complex 1 protein (LYR family)- Family
EA [auth U]PF02410Ribosomal silencing factor during starvation (RsfS)Ribosomal silencing factor during starvation- Family
EA [auth U]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
C [auth 2]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
CA [auth S]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
AA [auth Q]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
Z [auth P]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
Y [auth O]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
W [auth M]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
V [auth L]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
U [auth K]PF1078039S ribosomal protein L53/MRP-L53 (MRP_L53)39S ribosomal protein L53/MRP-L53- Family
U [auth K]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
T [auth J]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain
T [auth J]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domainDomain
T [auth J]PF18699Mitoribosomal protein mL52 (MRPL52)Mitoribosomal protein mL52- Family
S [auth I]PF10244Mitochondrial ribosomal subunit (MRP-L51)Mitochondrial ribosomal subunit- Family
S [auth I]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
R [auth H]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domainDomain
R [auth H]PF25131Large ribosomal subunit protein bL9m N-terminal domain (bL9m_N)Large ribosomal subunit protein bL9m N-terminal domainThis is a presumed domain found at the very N-terminal of Large ribosomal subunit protein bL9m from animals, a structural component of the large subunit of the ribosome. According to structure predictions, it may consist in a hairpin with two beta-sh ...This is a presumed domain found at the very N-terminal of Large ribosomal subunit protein bL9m from animals, a structural component of the large subunit of the ribosome. According to structure predictions, it may consist in a hairpin with two beta-sheets at each ends connected by a loop.
Domain
R [auth H]PF10501Ribosomal subunit 39S (Ribosomal_L50)Ribosomal subunit 39SThe 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absenc ...The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absence of the enzyme pseudouridine synthase (RluD) synthase, there is an accumulation of 50S and 30S subunits and the appearance of abnormal particles (62S and 39S), with concomitant loss of 70S ribosomes [2].
Domain
Q [auth G]PF05046Mitochondrial large subunit ribosomal protein (Img2) (Img2)Mitochondrial large subunit ribosomal protein (Img2)This family of proteins have been identified as part of the mitochondrial large ribosomal subunit in yeast [1]. Domain
P [auth F]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
P [auth F]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
O [auth E]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
O [auth E]PF1178839S mitochondrial ribosomal protein L46 (MRP-L46)39S mitochondrial ribosomal protein L46- Family
N [auth D]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
N [auth D]PF04280Tim44-like domain (Tim44)Tim44-like domainTim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostati ...Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [1]. This family includes the C-terminal region of Tim44 that has been shown to form a stable proteolytic fragment in yeast. This region is also found in a set of smaller bacterial proteins. The molecular function of the bacterial members of this family is unknown but transport seems likely. The crystal structure of the C terminal of Tim44 has revealed a large hydrophobic pocket which might play an important role in interacting with the acyl chains of lipid molecules in the mitochondrial membrane [3].
Domain
N [auth D]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
M [auth C]PF22892MRPL44 dsRNA-binding domain (DSRM_MRPL44)MRPL44 dsRNA-binding domainThis double stranded RNA-binding domain is found in the Large ribosomal subunit protein mL44 protein. Domain
M [auth C]PF22935Large ribosomal subunit protein mL44, endonuclease domain (RM44_endonuclase)Large ribosomal subunit protein mL44, endonuclease domainLarge ribosomal subunit protein mL44 (RM44) is a component of the 39S subunit of mitochondrial ribosome. It may play a role in the assembly/stability of nascent mitochondrial polypeptides exiting the ribosome. This entry represents the endonuclease ( ...Large ribosomal subunit protein mL44 (RM44) is a component of the 39S subunit of mitochondrial ribosome. It may play a role in the assembly/stability of nascent mitochondrial polypeptides exiting the ribosome. This entry represents the endonuclease (RNase III-like) domain [1-3].
Domain
M [auth C]PF0118916S rRNA methyltransferase RsmB/F (Methyltr_RsmB-F)16S rRNA methyltransferase RsmB/FThis is the catalytic core of this SAM-dependent 16S ribosomal methyltransferase RsmB/F enzyme [1,2]. There is a catalytic cysteine residue at 180 in UniProtKB:Q5SII2, with another highly conserved cysteine at residue 230. It methylates the C(5) posi ...This is the catalytic core of this SAM-dependent 16S ribosomal methyltransferase RsmB/F enzyme [1,2]. There is a catalytic cysteine residue at 180 in UniProtKB:Q5SII2, with another highly conserved cysteine at residue 230. It methylates the C(5) position of cytosine 2870 (m5C2870) in 25S rRNA [1,2].
Domain
A [auth 0]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F [auth 5]39S ribosomal protein L37, mitochondrial
X [auth N]39S ribosomal protein L16, mitochondrial
BA [auth R]39S ribosomal protein L20, mitochondrial
DA [auth T]39S ribosomal protein L22, mitochondrial
GA [auth W]39S ribosomal protein L27, mitochondrial
IA [auth Y]39S ribosomal protein L47, mitochondrial
KA [auth a]39S ribosomal protein L42, mitochondrial
PA [auth f]39S ribosomal protein L48, mitochondrial-
VA [auth m]39S ribosomal protein L55, mitochondrial
XA [auth p]Peptidyl-tRNA hydrolase ICT1, mitochondrial
YA [auth q]Growth arrest and DNA damage-inducible proteins-interacting protein 1
CB [auth v]MIEF1 upstream open reading frame protein
I [auth 8]39S ribosomal protein L40, mitochondrial
H [auth 7]39S ribosomal protein L39, mitochondrial
G [auth 6]39S ribosomal protein L38, mitochondrial-
DB [auth w]Acyl carrier protein, mitochondrial
BB [auth u]Mitochondrial assembly of ribosomal large subunit protein 1
AB [auth s]39S ribosomal protein S30, mitochondrial
ZA [auth r]39S ribosomal protein S18a, mitochondrial
E [auth 4]39S ribosomal protein L36, mitochondrial
WA [auth o]Ribosomal protein 63, mitochondrial
UA [auth k]39S ribosomal protein L53, mitochondrial-
TA [auth j]39S ribosomal protein L52, mitochondrial
SA [auth i]39S ribosomal protein L51, mitochondrial
RA [auth h]39S ribosomal protein L50, mitochondrial-
QA [auth g]39S ribosomal protein L49, mitochondrial
OA [auth e]39S ribosomal protein L46, mitochondrial
NA [auth d]39S ribosomal protein L45, mitochondrial
D [auth 3]39S ribosomal protein L35, mitochondrial
MA [auth c]39S ribosomal protein L44, mitochondrial
LA [auth b]39S ribosomal protein L43, mitochondrial
JA [auth Z]39S ribosomal protein L30, mitochondrial
HA [auth X]39S ribosomal protein L28, mitochondrial
FA [auth V]39S ribosomal protein L24, mitochondrial
EA [auth U]39S ribosomal protein L23, mitochondrial
C [auth 2]39S ribosomal protein L34, mitochondrial
CA [auth S]39S ribosomal protein L21, mitochondrial
AA [auth Q]39S ribosomal protein L19, mitochondrial
Z [auth P]39S ribosomal protein L18, mitochondrial
Y [auth O]39S ribosomal protein L17, mitochondrial
W [auth M]39S ribosomal protein L15, mitochondrial
V [auth L]39S ribosomal protein L14, mitochondrial
U [auth K]39S ribosomal protein L13, mitochondrial
T [auth J]39S ribosomal protein L11, mitochondrial
B [auth 1]39S ribosomal protein L33, mitochondrial
S [auth I]39S ribosomal protein L10, mitochondrial
R [auth H]39S ribosomal protein L9, mitochondrial
Q [auth G]Transcription termination factor 4, mitochondrial
P [auth F]39S ribosomal protein L4, mitochondrial
O [auth E]39S ribosomal protein L3, mitochondrial
N [auth D]39S ribosomal protein L2, mitochondrial
M [auth C]5-methylcytosine rRNA methyltransferase NSUN4
L [auth B]mitochondrial tRNAVal---
K [auth A]16S ribosomal RNA---
J [auth 9]39S ribosomal protein L41, mitochondrial
A [auth 0]39S ribosomal protein L32, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth 5]IPR052482Mitochondrial large ribosomal subunit mL37Family
F [auth 5]IPR010793Large ribosomal subunit protein mL37/mL65Family
X [auth N]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
X [auth N]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
X [auth N]IPR016180Large ribosomal subunit protein uL16 domainDomain
X [auth N]IPR047873Large ribosomal subunit protein uL16Family
BA [auth R]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
BA [auth R]IPR005813Large ribosomal subunit protein bL20Family
DA [auth T]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
DA [auth T]IPR001063Large ribosomal subunit protein uL22Family
DA [auth T]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
GA [auth W]IPR001684Large ribosomal subunit protein bL27Family
IA [auth Y]IPR038340MRP-L47 superfamily, mitochondrialHomologous Superfamily
IA [auth Y]IPR010729Large ribosomal subunit protein uL29m, mitochondrialFamily
KA [auth a]IPR019346Large ribosomal subunit protein mL42Family
PA [auth f]IPR027486Small ribosomal subunit protein uS10 domainDomain
PA [auth f]IPR027487Large ribosomal subunit protein mL48Family
PA [auth f]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
VA [auth m]IPR044884Large ribosomal subunit protein mL55 superfamilyHomologous Superfamily
VA [auth m]IPR018615Large ribosomal subunit protein mL55Family
XA [auth p]IPR052104Mitochondrial Release Factor mL62Family
XA [auth p]IPR000352Peptide chain release factor class IDomain
YA [auth q]IPR018472Large ribosomal subunit protein mL64Family
YA [auth q]IPR043035Large ribosomal subunit protein mL64 domain superfamilyHomologous Superfamily
CB [auth v]IPR008011Complex 1 LYR protein domainDomain
CB [auth v]IPR045300MIEF1-MP, LYR domainDomain
I [auth 8]IPR019192Large ribosomal subunit protein mL40Family
I [auth 8]IPR039145Large ribosomal subunit protein mL40, metazoa/plantsFamily
H [auth 7]IPR012676TGS-likeHomologous Superfamily
H [auth 7]IPR018163Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamilyHomologous Superfamily
H [auth 7]IPR050062Proline-tRNA synthetaseFamily
H [auth 7]IPR004095TGSDomain
H [auth 7]IPR012675Beta-grasp domain superfamilyHomologous Superfamily
G [auth 6]IPR036610PEBP-like superfamilyHomologous Superfamily
G [auth 6]IPR008914Phosphatidylethanolamine-binding proteinFamily
G [auth 6]IPR035810Phosphatidylethanolamine-binding protein, eukaryoticFamily
DB [auth w]IPR006162Phosphopantetheine attachment sitePTM
DB [auth w]IPR036736ACP-like superfamilyHomologous Superfamily
DB [auth w]IPR009081Phosphopantetheine binding ACP domainDomain
DB [auth w]IPR003231Acyl carrier proteinFamily
BB [auth u]IPR043519Nucleotidyltransferase superfamilyHomologous Superfamily
BB [auth u]IPR004394Protein Iojap/ribosomal silencing factor RsfSFamily
AB [auth s]IPR039982Large ribosomal subunit protein mL65Family
AB [auth s]IPR010793Large ribosomal subunit protein mL37/mL65Family
ZA [auth r]IPR001648Small ribosomal subunit protein bS18Family
ZA [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
E [auth 4]IPR000473Large ribosomal subunit protein bL36Family
E [auth 4]IPR052143Mitochondrial Large Ribosomal Subunit bL36mFamily
E [auth 4]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
WA [auth o]IPR016576Large ribosomal subunit protein mL63Family
UA [auth k]IPR019716Large ribosomal subunit protein mL53Family
UA [auth k]IPR052473Mitochondrial Large Ribosomal Subunit mL53Family
TA [auth j]IPR034596Large ribosomal subunit protein mL52Family
SA [auth i]IPR019373Large ribosomal subunit protein mL51Family
RA [auth h]IPR018305Large ribosomal subunit protein mL50Family
QA [auth g]IPR007740Large ribosomal subunit protein mL49Family
OA [auth e]IPR015797NUDIX hydrolase-like domain superfamilyHomologous Superfamily
OA [auth e]IPR021757Large ribosomal subunit protein mL46, N-terminalDomain
OA [auth e]IPR040008Large ribosomal subunit protein mL46Family
OA [auth e]IPR033650Large ribosomal subunit protein mL46, NUDIX domainDomain
NA [auth d]IPR032710NTF2-like domain superfamilyHomologous Superfamily
NA [auth d]IPR007379Tim44-like domainDomain
NA [auth d]IPR051975Mitochondrial Large Ribosomal Subunit mL45Family
D [auth 3]IPR021137Large ribosomal subunit protein bL35-likeFamily
D [auth 3]IPR019338Large ribosomal subunit protein bL35mFamily
D [auth 3]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
MA [auth c]IPR036389Ribonuclease III, endonuclease domain superfamilyHomologous Superfamily
MA [auth c]IPR044444Large ribosomal subunit protein mL44, dsRNA binding domain, metazoaDomain
MA [auth c]IPR055189Large ribosomal subunit protein mL44, endonuclease domainDomain
MA [auth c]IPR014720Double-stranded RNA-binding domainDomain
LA [auth b]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
LA [auth b]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
LA [auth b]IPR039927Large ribosomal subunit protein mL43Family
JA [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
JA [auth Z]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
JA [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
HA [auth X]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
HA [auth X]IPR026569Large ribosomal subunit protein bL28Family
HA [auth X]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
FA [auth V]IPR057264Large ribosomal subunit protein uL24, C-terminal domainDomain
FA [auth V]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
FA [auth V]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
FA [auth V]IPR003256Large ribosomal subunit protein uL24Family
FA [auth V]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
FA [auth V]IPR005824KOWDomain
FA [auth V]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
EA [auth U]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
EA [auth U]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
EA [auth U]IPR013025Large ribosomal subunit protein uL23-likeFamily
C [auth 2]IPR000271Large ribosomal subunit protein bL34Family
CA [auth S]IPR028909Large ribosomal subunit protein bL21-likeFamily
CA [auth S]IPR001787Large ribosomal subunit protein bL21Family
CA [auth S]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
AA [auth Q]IPR001857Large ribosomal subunit protein bL19Family
AA [auth Q]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
AA [auth Q]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Z [auth P]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
Z [auth P]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
Z [auth P]IPR057268Large ribosomal subunit protein uL18Family
Y [auth O]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
Y [auth O]IPR000456Large ribosomal subunit protein bL17Family
W [auth M]IPR021131Large ribosomal subunit protein uL15/eL18Domain
W [auth M]IPR030878Large ribosomal subunit protein uL15Family
W [auth M]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
W [auth M]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
V [auth L]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
V [auth L]IPR000218Large ribosomal subunit protein uL14Family
U [auth K]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
U [auth K]IPR005822Large ribosomal subunit protein uL13Family
U [auth K]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
U [auth K]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
T [auth J]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
T [auth J]IPR000911Ribosomal protein uL11Family
T [auth J]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
T [auth J]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
T [auth J]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
T [auth J]IPR006519Large ribosomal subunit protein uL11, bacteriaFamily
B [auth 1]IPR052008Mitochondrial ribosomal protein bL33Family
B [auth 1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
B [auth 1]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
B [auth 1]IPR001705Large ribosomal subunit protein bL33Family
S [auth I]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
S [auth I]IPR001790Large ribosomal subunit protein uL10, N-terminalDomain
S [auth I]IPR047865Large ribosomal subunit protein uL10, bacteria/organellaFamily
R [auth H]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
R [auth H]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
R [auth H]IPR054302Large ribosomal subunit protein bL9m, C-terminal domainDomain
R [auth H]IPR056864Large ribosomal subunit protein bL9m, N-terminal domainDomain
R [auth H]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
R [auth H]IPR000244Large ribosomal subunit protein bL9Family
Q [auth G]IPR038538MTERF superfamily, mitochondrial/chloroplasticHomologous Superfamily
Q [auth G]IPR003690Transcription termination factor, mitochondrial/chloroplasticFamily
P [auth F]IPR013005Large ribosomal subunit protein uL4-likeFamily
P [auth F]IPR002136Large ribosomal subunit protein uL4Family
P [auth F]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
O [auth E]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
O [auth E]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
O [auth E]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
O [auth E]IPR000597Large ribosomal subunit protein uL3Family
N [auth D]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
N [auth D]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
N [auth D]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
N [auth D]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
N [auth D]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
N [auth D]IPR002171Large ribosomal subunit protein uL2Family
M [auth C]IPR001678SAM-dependent methyltransferase RsmB-F/NOP2-type domainDomain
M [auth C]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
M [auth C]IPR023267RNA (C5-cytosine) methyltransferaseFamily
M [auth C]IPR049560SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic coreDomain
J [auth 9]IPR019189Large ribosomal subunit protein mL41Family
A [auth 0]IPR002677Large ribosomal subunit protein bL32Family
A [auth 0]IPR051991Mitochondrial ribosomal protein bL32Family
A [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
F [auth 5]Pharos:  Q9BZE1
X [auth N]Pharos:  Q9NX20
BA [auth R]Pharos:  Q9BYC9
DA [auth T]Pharos:  Q9NWU5
GA [auth W]Pharos:  Q9P0M9
IA [auth Y]Pharos:  Q9HD33
KA [auth a]Pharos:  Q9Y6G3
PA [auth f]Pharos:  Q96GC5
VA [auth m]Pharos:  Q7Z7F7
XA [auth p]Pharos:  Q14197
YA [auth q]Pharos:  Q8TAE8
CB [auth v]Pharos:  L0R8F8
I [auth 8]Pharos:  Q9NQ50
H [auth 7]Pharos:  Q9NYK5
DB [auth w]Pharos:  O14561
BB [auth u]Pharos:  Q96EH3
AB [auth s]Pharos:  Q9NP92
ZA [auth r]Pharos:  Q9NVS2
E [auth 4]Pharos:  Q9P0J6
WA [auth o]Pharos:  Q9BQC6
TA [auth j]Pharos:  Q86TS9
SA [auth i]Pharos:  Q4U2R6
RA [auth h]Pharos:  Q8N5N7
QA [auth g]Pharos:  Q13405
NA [auth d]Pharos:  Q9BRJ2
D [auth 3]Pharos:  Q9NZE8
MA [auth c]Pharos:  Q9H9J2
LA [auth b]Pharos:  Q8N983
JA [auth Z]Pharos:  Q8TCC3
HA [auth X]Pharos:  Q13084
FA [auth V]Pharos:  Q96A35
EA [auth U]Pharos:  Q16540
C [auth 2]Pharos:  Q9BQ48
AA [auth Q]Pharos:  P49406
Z [auth P]Pharos:  Q9H0U6
Y [auth O]Pharos:  Q9NRX2
W [auth M]Pharos:  Q9P015
V [auth L]Pharos:  Q6P1L8
U [auth K]Pharos:  Q9BYD1
T [auth J]Pharos:  Q9Y3B7
B [auth 1]Pharos:  O75394
S [auth I]Pharos:  Q7Z7H8
R [auth H]Pharos:  Q9BYD2
Q [auth G]Pharos:  Q7Z6M4
P [auth F]Pharos:  Q9BYD3
O [auth E]Pharos:  P09001
N [auth D]Pharos:  Q5T653
M [auth C]Pharos:  Q96CB9
J [auth 9]Pharos:  Q8IXM3
A [auth 0]Pharos:  Q9BYC8