7PAU | pdb_00007pau

free 50S in complex with ribosome recycling factor in untreated Mycoplasma pneumoniae cells


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth 1]SCOP2B SuperfamilyL35p-like 8107614 3000790 SCOP2B (2022-06-29)
C [auth 2]SCOP2B SuperfamilyRibosomal protein L36 8107602 3001346 SCOP2B (2022-06-29)
G [auth c]SCOP2B SuperfamilyRibosomal protein L4 8107624 3001146 SCOP2B (2022-06-29)
H [auth d]SCOP2B SuperfamilyRL5-like 8107658 3001709 SCOP2B (2022-06-29)
M [auth i]SCOP2B SuperfamilyRibosomal protein L13 8107608 3001134 SCOP2B (2022-06-29)
N [auth j]SCOP2B Superfamily50S Ribosomal protein L14-like 8107662 3000433 SCOP2B (2022-06-29)
Q [auth m]SCOP2 FamilyProkaryotic ribosomal protein L17 8107665 4003526 SCOP2 (2022-06-29)
Q [auth m]SCOP2 SuperfamilyProkaryotic ribosomal protein L17 8107666 3000995 SCOP2 (2022-06-29)
S [auth o]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8107604 3000334 SCOP2B (2022-06-29)
T [auth p]SCOP2B SuperfamilyRibosomal protein L20 8107632 3000563 SCOP2B (2022-06-29)
Y [auth u]SCOP2B SuperfamilyRibosomal L27 protein-like 8107616 3000539 SCOP2B (2022-06-29)
CA [auth y]SCOP2B SuperfamilyZn-binding ribosomal proteins 8107612 3001320 SCOP2B (2022-06-29)
DA [auth z]SCOP2 FamilyRibosomal protein L33p 8107629 4000511 SCOP2 (2022-06-29)
DA [auth z]SCOP2 SuperfamilyZn-binding ribosomal proteins 8107630 3001320 SCOP2 (2022-06-29)
F [auth b]SCOP2B SuperfamilyTranslational proteins 8107626 3000811 SCOP2B (2022-06-29)
X [auth t]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8107660 3000334 SCOP2B (2022-06-29)
U [auth q]SCOP2B Superfamilyl21p-like 8107634 3002005 SCOP2B (2022-06-29)
R [auth n]SCOP2B SuperfamilyTranslational machinery components 8107652 3000571 SCOP2B (2022-06-29)
P [auth l]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8107596 3000884 SCOP2B (2022-06-29)
O [auth k]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8107650 3001045 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 0]Cation_ATPasee7pau01 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
B [auth 1]Cation_ATPasee7pau11 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
C [auth 2]Cation_ATPasee7pau21 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
D [auth 7]Cation_ATPasee7pau71 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
E [auth a]Cation_ATPasee7paua1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
G [auth c]Cation_ATPasee7pauc1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
H [auth d]Cation_ATPasee7paud1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
L [auth h]Cation_ATPasee7pauh1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
M [auth i]Cation_ATPasee7paui1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
N [auth j]Cation_ATPasee7pauj1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
Q [auth m]Cation_ATPasee7paum1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
S [auth o]Cation_ATPasee7pauo1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
T [auth p]Cation_ATPasee7paup1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
W [auth s]Cation_ATPasee7paus1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
Y [auth u]Cation_ATPasee7pauu1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
Z [auth v]Cation_ATPasee7pauv1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
CA [auth y]Cation_ATPasee7pauy1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
DA [auth z]Cation_ATPasee7pauz1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
I [auth e]Cation_ATPasee7paue1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
F [auth b]Cation_ATPasee7paub1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
BA [auth x]Cation_ATPasee7paux1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
X [auth t]Cation_ATPasee7paut1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
U [auth q]Cation_ATPasee7pauq1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
R [auth n]Cation_ATPasee7paun1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
P [auth l]Cation_ATPasee7paul1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
O [auth k]Cation_ATPasee7pauk1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
K [auth g]Cation_ATPasee7paug1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)
J [auth f]Cation_ATPasee7pauf1 A: alpha bundlesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Cation_ATPaseECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 0]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
B [auth 1]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
C [auth 2]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain
D [auth 7]PF01765Ribosome recycling factor (RRF)Ribosome recycling factorThe ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth [1]. Thus ribosomes are "recycled" and ready for another round of protein synthe ...The ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth [1]. Thus ribosomes are "recycled" and ready for another round of protein synthesis.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 0]50S ribosomal protein L34
B [auth 1]50S ribosomal protein L35
C [auth 2]50S ribosomal protein L36
D [auth 7]Ribosome-recycling factor
E [auth a]50S ribosomal protein L2
G [auth c]50S ribosomal protein L4
H [auth d]50S ribosomal protein L5
L [auth h]50S ribosomal protein L11
M [auth i]50S ribosomal protein L13
N [auth j]50S ribosomal protein L14
Q [auth m]50S ribosomal protein L17
S [auth o]50S ribosomal protein L19
T [auth p]50S ribosomal protein L20
V [auth r]50S ribosomal protein L22
W [auth s]50S ribosomal protein L23
Y [auth u]50S ribosomal protein L27
Z [auth v]50S ribosomal protein L28
CA [auth y]50S ribosomal protein L32
DA [auth z]50S ribosomal protein L33 1
FA [auth 4]5S ribosomal RNA---
I [auth e]50S ribosomal protein L6
F [auth b]50S ribosomal protein L3
EA [auth 3]23S ribosomal RNA---
BA [auth x]50S ribosomal protein L31
AA [auth w]50S ribosomal protein L29
X [auth t]50S ribosomal protein L24
U [auth q]50S ribosomal protein L21
R [auth n]50S ribosomal protein L18
P [auth l]50S ribosomal protein L16
O [auth k]50S ribosomal protein L15
K [auth g]50S ribosomal protein L10
J [auth f]50S ribosomal protein L9

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 0]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
A [auth 0]IPR000271Large ribosomal subunit protein bL34Family
B [auth 1]IPR021137Large ribosomal subunit protein bL35-likeFamily
B [auth 1]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
B [auth 1]IPR001706Large ribosomal subunit protein bL35Family
B [auth 1]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
C [auth 2]IPR000473Large ribosomal subunit protein bL36Family
C [auth 2]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
D [auth 7]IPR023584Ribosome recycling factor domainDomain
D [auth 7]IPR036191RRF superfamilyHomologous Superfamily
D [auth 7]IPR002661Ribosome recycling factorFamily
E [auth a]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
E [auth a]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
E [auth a]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth a]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
E [auth a]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
E [auth a]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
E [auth a]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
E [auth a]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
E [auth a]IPR002171Large ribosomal subunit protein uL2Family
G [auth c]IPR013005Large ribosomal subunit protein uL4-likeFamily
G [auth c]IPR002136Large ribosomal subunit protein uL4Family
G [auth c]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
H [auth d]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
H [auth d]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
H [auth d]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
H [auth d]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
H [auth d]IPR002132Large ribosomal subunit protein uL5Family
H [auth d]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
L [auth h]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
L [auth h]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
L [auth h]IPR000911Ribosomal protein uL11Family
L [auth h]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
L [auth h]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
L [auth h]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
L [auth h]IPR006519Large ribosomal subunit protein uL11, bacteriaFamily
M [auth i]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
M [auth i]IPR005822Large ribosomal subunit protein uL13Family
M [auth i]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
M [auth i]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
N [auth j]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
N [auth j]IPR000218Large ribosomal subunit protein uL14Family
N [auth j]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
N [auth j]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
Q [auth m]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
Q [auth m]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
Q [auth m]IPR000456Large ribosomal subunit protein bL17Family
S [auth o]IPR001857Large ribosomal subunit protein bL19Family
S [auth o]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
S [auth o]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
S [auth o]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
T [auth p]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
T [auth p]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
T [auth p]IPR005813Large ribosomal subunit protein bL20Family
V [auth r]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
V [auth r]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
V [auth r]IPR001063Large ribosomal subunit protein uL22Family
V [auth r]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
V [auth r]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
W [auth s]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
W [auth s]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
W [auth s]IPR013025Large ribosomal subunit protein uL23-likeFamily
Y [auth u]IPR001684Large ribosomal subunit protein bL27Family
Y [auth u]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
Z [auth v]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
Z [auth v]IPR050096Bacterial ribosomal protein bL28Family
Z [auth v]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
Z [auth v]IPR026569Large ribosomal subunit protein bL28Family
Z [auth v]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
CA [auth y]IPR002677Large ribosomal subunit protein bL32Family
CA [auth y]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
CA [auth y]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
DA [auth z]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
DA [auth z]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
DA [auth z]IPR001705Large ribosomal subunit protein bL33Family
DA [auth z]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
I [auth e]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
I [auth e]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
I [auth e]IPR000702Large ribosomal subunit protein uL6-likeFamily
I [auth e]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
I [auth e]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
F [auth b]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
F [auth b]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
F [auth b]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
F [auth b]IPR000597Large ribosomal subunit protein uL3Family
BA [auth x]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
BA [auth x]IPR027491Large ribosomal subunit protein bL31 type AFamily
BA [auth x]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
BA [auth x]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
AA [auth w]IPR050063Universal ribosomal protein uL29Family
AA [auth w]IPR001854Large ribosomal subunit protein uL29Family
AA [auth w]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
AA [auth w]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
X [auth t]IPR057264Large ribosomal subunit protein uL24, C-terminal domainDomain
X [auth t]IPR003256Large ribosomal subunit protein uL24Family
X [auth t]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
X [auth t]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
X [auth t]IPR005824KOWDomain
X [auth t]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth t]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
U [auth q]IPR028909Large ribosomal subunit protein bL21-likeFamily
U [auth q]IPR001787Large ribosomal subunit protein bL21Family
U [auth q]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
U [auth q]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
R [auth n]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
R [auth n]IPR057268Large ribosomal subunit protein uL18Family
R [auth n]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
P [auth l]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
P [auth l]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
P [auth l]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
P [auth l]IPR016180Large ribosomal subunit protein uL16 domainDomain
P [auth l]IPR047873Large ribosomal subunit protein uL16Family
O [auth k]IPR021131Large ribosomal subunit protein uL15/eL18Domain
O [auth k]IPR030878Large ribosomal subunit protein uL15Family
O [auth k]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
O [auth k]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
K [auth g]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
K [auth g]IPR001790Large ribosomal subunit protein uL10, N-terminalDomain
K [auth g]IPR022973Large ribosomal subunit protein uL10, bacteriaFamily
K [auth g]IPR047865Large ribosomal subunit protein uL10, bacteria/organellaFamily
K [auth g]IPR002363Large ribosomal subunit protein uL10, conserved site, bacteriaConserved Site
J [auth f]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
J [auth f]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
J [auth f]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
J [auth f]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
J [auth f]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
J [auth f]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
J [auth f]IPR000244Large ribosomal subunit protein bL9Family