7QOI | pdb_00007qoi

Unique vertex of the phicrAss001 virion

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZB [auth Ei]	MIF4G	e7qoiEi1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
VA [auth Ck]	MIF4G	e7qoiCk1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
UA [auth Cj]	MIF4G	e7qoiCj1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
TA [auth Ci]	MIF4G	e7qoiCi1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
P [auth Ak]	MIF4G	e7qoiAk1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
O [auth Aj]	MIF4G	e7qoiAj1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
N [auth Ai]	MIF4G	e7qoiAi1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
LB [auth Dk]	MIF4G	e7qoiDk1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
KB [auth Dj]	MIF4G	e7qoiDj1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
JB [auth Di]	MIF4G	e7qoiDi1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
FA [auth Bk]	MIF4G	e7qoiBk1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
EA [auth Bj]	MIF4G	e7qoiBj1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
DA [auth Bi]	MIF4G	e7qoiBi1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
BC [auth Ek]	MIF4G	e7qoiEk1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
AC [auth Ej]	MIF4G	e7qoiEj1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AD [auth FY], BD [auth FZ], CD [auth GA], DD [auth GB], ED [auth GC], AD [auth FY], BD [auth FZ], CD [auth GA], DD [auth GB], ED [auth GC], FD [auth GD], GD [auth GE], HD [auth GF], ID [auth GG], JD [auth GH], KD [auth GI], LD [auth GJ]	PF25702	Phage tail ring protein 2 (CrAss_Ring_2)	Phage tail ring protein 2	This entry represents the Ring 1 (R2) protein, also known as gp40, which is part of the tail assembly in crassviruses. The R2 protein forms one of five stacked dodecameric rings that make up the tail barrel. These proteins share a conserved fold cons ...	This entry represents the Ring 1 (R2) protein, also known as gp40, which is part of the tail assembly in crassviruses. The R2 protein forms one of five stacked dodecameric rings that make up the tail barrel. These proteins share a conserved fold consisting of two domains: an alpha-helical domain and a beta-sandwich domain. The extended tail barrel formed by these ring proteins is a distinctive feature of crassviruses and may assist the tail muzzle in reaching the outer cell membrane through the compact capsular polysaccharide layer of the host bacteria.	Domain
OC [auth FM], PC [auth FN], QC [auth FO], RC [auth FP], SC [auth FQ], OC [auth FM], PC [auth FN], QC [auth FO], RC [auth FP], SC [auth FQ], TC [auth FR], UC [auth FS], VC [auth FT], WC [auth FU], XC [auth FV], YC [auth FW], ZC [auth FX]	PF24228	Phage tail ring protein 1 (CrAss_Ring_1)	Phage tail ring protein 1	-	Family
A [auth AA], AB [auth DE], B [auth AB], BB [auth DF], C [auth AC], A [auth AA], AB [auth DE], B [auth AB], BB [auth DF], C [auth AC], D [auth AD], E [auth AE], F [auth AF], GA [auth CA], HA [auth CB], IA [auth CC], JA [auth CD], KA [auth CE], LA [auth CF], MB [auth EA], NB [auth EB], OB [auth EC], PB [auth ED], Q [auth BA], QB [auth EE], R [auth BB], RB [auth EF], S [auth BC], T [auth BD], U [auth BE], V [auth BF], WA [auth DA], XA [auth DB], YA [auth DC], ZA [auth DD]	PF25650	Bacteriophage crAss001 auxiliary capsid protein (crAss_AuxCP)	Bacteriophage crAss001 auxiliary capsid protein	-	Family
A [auth AA], AB [auth DE], B [auth AB], BB [auth DF], C [auth AC], A [auth AA], AB [auth DE], B [auth AB], BB [auth DF], C [auth AC], D [auth AD], E [auth AE], F [auth AF], GA [auth CA], HA [auth CB], IA [auth CC], JA [auth CD], KA [auth CE], LA [auth CF], MB [auth EA], NB [auth EB], OB [auth EC], PB [auth ED], Q [auth BA], QB [auth EE], R [auth BB], RB [auth EF], S [auth BC], T [auth BD], U [auth BE], V [auth BF], WA [auth DA], XA [auth DB], YA [auth DC], ZA [auth DD]	PF23898	Crassvirus major capsid protein (Crass_capsid)	Crassvirus major capsid protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AE [auth IM], BE [auth IN], CE [auth IO], DE [auth IP], EE [auth IQ], AE [auth IM], BE [auth IN], CE [auth IO], DE [auth IP], EE [auth IQ], FE [auth IR], GE [auth IS], HE [auth IT], IE [auth IU], JE [auth IV], MD [auth GK], ND [auth GL], OD [auth GM], PD [auth GN], QD [auth GO], RD [auth GP], SD [auth GQ], TD [auth GR], UD [auth GS], VD [auth GT], WD [auth GU], XD [auth GV], YD [auth IK], ZD [auth IL]	Cargo protein 1 gp45	-	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	host cellular component cellular anatomical structure host cell part host cell membrane other organism part virion component
AD [auth FY], BD [auth FZ], CD [auth GA], DD [auth GB], ED [auth GC], AD [auth FY], BD [auth FZ], CD [auth GA], DD [auth GB], ED [auth GC], FD [auth GD], GD [auth GE], HD [auth GF], ID [auth GG], JD [auth GH], KD [auth GI], LD [auth GJ]	Ring protein 2 gp40	-	-	virion component
OC [auth FM], PC [auth FN], QC [auth FO], RC [auth FP], SC [auth FQ], OC [auth FM], PC [auth FN], QC [auth FO], RC [auth FP], SC [auth FQ], TC [auth FR], UC [auth FS], VC [auth FT], WC [auth FU], XC [auth FV], YC [auth FW], ZC [auth FX]	Ring protein 1 gp43	-	-	virus tail virion component
CC [auth FA], DC [auth FB], EC [auth FC], FC [auth FD], GC [auth FE], CC [auth FA], DC [auth FB], EC [auth FC], FC [auth FD], GC [auth FE], HC [auth FF], IC [auth FG], JC [auth FH], KC [auth FI], LC [auth FJ], MC [auth FK], NC [auth FL]	Portal protein gp20	-	-	viral capsid virion component
AC [auth Ej], BC [auth Ek], DA [auth Bi], EA [auth Bj], FA [auth Bk], AC [auth Ej], BC [auth Ek], DA [auth Bi], EA [auth Bj], FA [auth Bk], JB [auth Di], KB [auth Dj], LB [auth Dk], N [auth Ai], O [auth Aj], P [auth Ak], TA [auth Ci], UA [auth Cj], VA [auth Ck], ZB [auth Ei]	Head fiber trimer protein gp21	-	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host	virion component
BA [auth Bg], CA [auth Bh], HB [auth Dg], IB [auth Dh], L [auth Ag], BA [auth Bg], CA [auth Bh], HB [auth Dg], IB [auth Dh], L [auth Ag], M [auth Ah], RA [auth Cg], SA [auth Ch], XB [auth Eg], YB [auth Eh]	Portal vertex capsid protein gp57	-	-	virion component
AA [auth Bf], CB [auth Da], DB [auth Db], EB [auth Dd], FB [auth De], AA [auth Bf], CB [auth Da], DB [auth Db], EB [auth Dd], FB [auth De], G [auth Aa], GB [auth Df], H [auth Ab], I [auth Ad], J [auth Ae], K [auth Af], MA [auth Ca], NA [auth Cb], OA [auth Cd], PA [auth Ce], QA [auth Cf], SB [auth Ea], TB [auth Eb], UB [auth Ed], VB [auth Ee], W [auth Ba], WB [auth Ef], X [auth Bb], Y [auth Bd], Z [auth Be]	Auxiliary capsid protein gp36	-	-	viral capsid virion component viral capsid, decoration
A [auth AA], AB [auth DE], B [auth AB], BB [auth DF], C [auth AC], A [auth AA], AB [auth DE], B [auth AB], BB [auth DF], C [auth AC], D [auth AD], E [auth AE], F [auth AF], GA [auth CA], HA [auth CB], IA [auth CC], JA [auth CD], KA [auth CE], LA [auth CF], MB [auth EA], NB [auth EB], OB [auth EC], PB [auth ED], Q [auth BA], QB [auth EE], R [auth BB], RB [auth EF], S [auth BC], T [auth BD], U [auth BE], V [auth BF], WA [auth DA], XA [auth DB], YA [auth DC], ZA [auth DD]	Major capsid protein gp32	-	-	viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AE [auth IM], BE [auth IN], CE [auth IO], DE [auth IP], EE [auth IQ], AE [auth IM], BE [auth IN], CE [auth IO], DE [auth IP], EE [auth IQ], FE [auth IR], GE [auth IS], HE [auth IT], IE [auth IU], JE [auth IV], MD [auth GK], ND [auth GL], OD [auth GM], PD [auth GN], QD [auth GO], RD [auth GP], SD [auth GQ], TD [auth GR], UD [auth GS], VD [auth GT], WD [auth GU], XD [auth GV], YD [auth IK], ZD [auth IL]	IPR058049	Cargo protein 1, compact domain	Domain
AD [auth FY], BD [auth FZ], CD [auth GA], DD [auth GB], ED [auth GC], AD [auth FY], BD [auth FZ], CD [auth GA], DD [auth GB], ED [auth GC], FD [auth GD], GD [auth GE], HD [auth GF], ID [auth GG], JD [auth GH], KD [auth GI], LD [auth GJ]	IPR057878	Phage tail ring protein 2	Family
OC [auth FM], PC [auth FN], QC [auth FO], RC [auth FP], SC [auth FQ], OC [auth FM], PC [auth FN], QC [auth FO], RC [auth FP], SC [auth FQ], TC [auth FR], UC [auth FS], VC [auth FT], WC [auth FU], XC [auth FV], YC [auth FW], ZC [auth FX]	IPR057118	Ring protein 1-like	Family
AC [auth Ej], BC [auth Ek], DA [auth Bi], EA [auth Bj], FA [auth Bk], AC [auth Ej], BC [auth Ek], DA [auth Bi], EA [auth Bj], FA [auth Bk], JB [auth Di], KB [auth Dj], LB [auth Dk], N [auth Ai], O [auth Aj], P [auth Ak], TA [auth Ci], UA [auth Cj], VA [auth Ck], ZB [auth Ei]	IPR022741	Bacteriophage B103, Gp8, head fibre	Family
BA [auth Bg], CA [auth Bh], HB [auth Dg], IB [auth Dh], L [auth Ag], BA [auth Bg], CA [auth Bh], HB [auth Dg], IB [auth Dh], L [auth Ag], M [auth Ah], RA [auth Cg], SA [auth Ch], XB [auth Eg], YB [auth Eh]	IPR057879	Portal vertex auxiliary protein	Family
AA [auth Bf], CB [auth Da], DB [auth Db], EB [auth Dd], FB [auth De], AA [auth Bf], CB [auth Da], DB [auth Db], EB [auth Dd], FB [auth De], G [auth Aa], GB [auth Df], H [auth Ab], I [auth Ad], J [auth Ae], K [auth Af], MA [auth Ca], NA [auth Cb], OA [auth Cd], PA [auth Ce], QA [auth Cf], SB [auth Ea], TB [auth Eb], UB [auth Ed], VB [auth Ee], W [auth Ba], WB [auth Ef], X [auth Bb], Y [auth Bd], Z [auth Be]	IPR058048	Auxiliary capsid protein, crAss001	Family
A [auth AA], AB [auth DE], B [auth AB], BB [auth DF], C [auth AC], A [auth AA], AB [auth DE], B [auth AB], BB [auth DF], C [auth AC], D [auth AD], E [auth AE], F [auth AF], GA [auth CA], HA [auth CB], IA [auth CC], JA [auth CD], KA [auth CE], LA [auth CF], MB [auth EA], NB [auth EB], OB [auth EC], PB [auth ED], Q [auth BA], QB [auth EE], R [auth BB], RB [auth EF], S [auth BC], T [auth BD], U [auth BE], V [auth BF], WA [auth DA], XA [auth DB], YA [auth DC], ZA [auth DD]	IPR056401	Major capsid protein, crassvirus	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.