7SPU | pdb_00007spu

In situ cryo-EM structure of bacteriophage Sf6 gp3:gp7:gp5 complex in conformation 1 at 3.73A resolution

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth X]	COQ9	e7spuX1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
Y [auth W]	COQ9	e7spuW1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
X [auth V]	COQ9	e7spuV1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
WA [auth u]	COQ9	e7spuu1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
W [auth U]	COQ9	e7spuU1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
VA [auth t]	COQ9	e7sput1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
V [auth T]	COQ9	e7spuT1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
UA [auth s]	COQ9	e7spus1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
U [auth S]	COQ9	e7spuS1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
T [auth R]	COQ9	e7spuR1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
SA [auth q]	COQ9	e7spuq1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
S [auth Q]	COQ9	e7spuQ1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
R [auth P]	COQ9	e7spuP1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
QA [auth o]	COQ9	e7spuo1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
Q [auth O]	COQ9	e7spuO1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
P [auth N]	COQ9	e7spuN1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
OA [auth m]	COQ9	e7spum1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
O [auth M]	COQ9	e7spuM1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
NA [auth l]	COQ9	e7spul1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
MA [auth k]	COQ9	e7spuk1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
LA [auth j]	COQ9	e7spuj1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
KA [auth i]	COQ9	e7spui1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
IA [auth g]	COQ9	e7spug1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
GA [auth e]	COQ9	e7spue1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
FA [auth d]	COQ9	e7spud1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
EA [auth c]	COQ9	e7spuc1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
DA [auth b]	COQ9	e7spub1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
CA [auth a]	COQ9	e7spua1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
BA [auth Z]	COQ9	e7spuZ1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
AB [auth y]	COQ9	e7spuy1	A: beta barrels	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: COQ9	ECOD (v294.2)
N [auth L]	MIF4G	e7spuL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
M [auth K]	MIF4G	e7spuK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
L [auth J]	MIF4G	e7spuJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
K [auth I]	MIF4G	e7spuI1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
J [auth H]	MIF4G	e7spuH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
I [auth G]	MIF4G	e7spuG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
H [auth F]	MIF4G	e7spuF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
G [auth E]	MIF4G	e7spuE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
F [auth D]	MIF4G	e7spuD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
E [auth C]	MIF4G	e7spuC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
D [auth B]	MIF4G	e7spuB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
C [auth A]	MIF4G	e7spuA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
ZA [auth x]	MIF4G	e7spux1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
YA [auth w]	MIF4G	e7spuw1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
XA [auth v]	MIF4G	e7spuv1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
TA [auth r]	MIF4G	e7spur1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
RA [auth p]	MIF4G	e7spup1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
PA [auth n]	MIF4G	e7spun1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
JA [auth h]	MIF4G	e7spuh1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
HA [auth f]	MIF4G	e7spuf1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
BB [auth z]	MIF4G	e7spuz1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
B [auth 1]	MIF4G	e7spu11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
AA [auth Y]	MIF4G	e7spuY1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
A [auth 0]	MIF4G	e7spu01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L]	PF16510	Phage P22-like portal protein (P22_portal)	Phage P22-like portal protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AB [auth y], BA [auth Z], CA [auth a], DA [auth b], EA [auth c], AB [auth y], BA [auth Z], CA [auth a], DA [auth b], EA [auth c], FA [auth d], GA [auth e], IA [auth g], KA [auth i], LA [auth j], MA [auth k], NA [auth l], O [auth M], OA [auth m], P [auth N], Q [auth O], QA [auth o], R [auth P], S [auth Q], SA [auth q], T [auth R], U [auth S], UA [auth s], V [auth T], VA [auth t], W [auth U], WA [auth u], X [auth V], Y [auth W], Z [auth X]	Gene 5 protein	-	-	-
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L]	Gene 3 protein	-	-	-
A [auth 0], AA [auth Y], B [auth 1], BB [auth z], HA [auth f], A [auth 0], AA [auth Y], B [auth 1], BB [auth z], HA [auth f], JA [auth h], PA [auth n], RA [auth p], TA [auth r], XA [auth v], YA [auth w], ZA [auth x]	Gene 7 protein	cation binding ion binding binding metal ion binding small molecule binding	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AB [auth y], BA [auth Z], CA [auth a], DA [auth b], EA [auth c], AB [auth y], BA [auth Z], CA [auth a], DA [auth b], EA [auth c], FA [auth d], GA [auth e], IA [auth g], KA [auth i], LA [auth j], MA [auth k], NA [auth l], O [auth M], OA [auth m], P [auth N], Q [auth O], QA [auth o], R [auth P], S [auth Q], SA [auth q], T [auth R], U [auth S], UA [auth s], V [auth T], VA [auth t], W [auth U], WA [auth u], X [auth V], Y [auth W], Z [auth X]	IPR024659	Major capsid protein Gp5	Family
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], C [auth A], D [auth B], E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H], K [auth I], L [auth J], M [auth K], N [auth L]	IPR032427	Phage P22-like portal protein	Family
A [auth 0], AA [auth Y], B [auth 1], BB [auth z], HA [auth f], A [auth 0], AA [auth Y], B [auth 1], BB [auth z], HA [auth f], JA [auth h], PA [auth n], RA [auth p], TA [auth r], XA [auth v], YA [auth w], ZA [auth x]	IPR038258	Peptidoglycan hydrolase Gp4 superfamily	Homologous Superfamily
A [auth 0], AA [auth Y], B [auth 1], BB [auth z], HA [auth f], A [auth 0], AA [auth Y], B [auth 1], BB [auth z], HA [auth f], JA [auth h], PA [auth n], RA [auth p], TA [auth r], XA [auth v], YA [auth w], ZA [auth x]	IPR020362	Tail accessory factor GP4	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.