Annotations: 7SVP

Structure of compound 34 bound to human Phospholipase D2 catalytic domain

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth C], B [auth A], C [auth B], D	PF13091	Cardiolipin synthase, PLD-like domain (PLDc_2)	Cardiolipin synthase, PLD-like domain	This is a PLD-like domain mainly found in Cardiolipin synthases. These enzymes catalyse the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol [1]. M ...	This is a PLD-like domain mainly found in Cardiolipin synthases. These enzymes catalyse the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol [1]. Mitochondrial cardiolipin hydrolase (PLD6) from mammals has phospholipase and nuclease activities, depending on the different physiological conditions [2] and it plays a key role in mitochondrial fusion and fission via its phospholipase activity [3].	Domain
A [auth C], B [auth A], C [auth B], D	PF00614	Phospholipase D (PLDc)	Phospholipase D	Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles ...	Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site [1-5].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C], B [auth A], C [auth B], D	Phospholipase D2	ion binding binding anion binding phosphatidylinositol binding small molecule binding phosphoric ester hydrolase activity phospholipase activity hydrolase activity, acting on ester bonds phosphoric diester hydrolase activity glycerophospholipase activity hydrolase activity catalytic activity D-type glycerophospholipase activity lipase activity	cellular component organization organelle organization cellular process cellular component organization or biogenesis cytoskeleton organization phosphatidic acid biosynthetic process glycerophospholipid biosynthetic process phosphatidic acid metabolic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phospholipid biosynthetic process phospholipid metabolic process biosynthetic process cellular component organization organelle organization cellular process cellular component organization or biogenesis cytoskeleton organization phosphatidic acid biosynthetic process glycerophospholipid biosynthetic process phosphatidic acid metabolic process glycerophospholipid metabolic process lipid biosynthetic process primary metabolic process phospholipid biosynthetic process phospholipid metabolic process biosynthetic process glycerolipid biosynthetic process organophosphate metabolic process organophosphate biosynthetic process glycerolipid metabolic process metabolic process phosphorus metabolic process lipid metabolic process synaptic vesicle recycling localization cellular localization transport establishment of localization in cell synaptic vesicle cycle establishment of localization vesicle-mediated transport vesicle-mediated transport in synapse lipid catabolic process catabolic process phospholipid catabolic process organophosphate catabolic process cellular response to stimulus import into cell immune response-regulating cell surface receptor signaling pathway regulation of cellular process response to stimulus signaling positive regulation of biological process Fc-gamma receptor signaling pathway involved in phagocytosis cell communication positive regulation of response to stimulus immune response-activating signaling pathway Fc receptor signaling pathway immune response-regulating signaling pathway positive regulation of immune response phagocytosis regulation of immune system process signal transduction Fc-gamma receptor signaling pathway positive regulation of immune system process regulation of biological process cell surface receptor signaling pathway immune response immune response-activating cell surface receptor signaling pathway biological regulation Fc receptor mediated stimulatory signaling pathway regulation of response to stimulus immune system process regulation of immune response endocytosis activation of immune response small GTPase-mediated signal transduction intracellular signal transduction intracellular signaling cassette regulation of localization regulation of transport regulation of vesicle-mediated transport	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle brush border membrane membrane plasma membrane cluster of actin-based cell projections membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle brush border membrane membrane plasma membrane cluster of actin-based cell projections plasma membrane bounded cell projection brush border cell periphery cell projection apical part of cell plasma membrane region apical plasma membrane cell projection membrane presynapse synapse cell junction organelle subcompartment endomembrane system endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C], B [auth A], C [auth B], D	IPR015679	Phospholipase D family	Family
A [auth C], B [auth A], C [auth B], D	IPR001849	Pleckstrin homology domain	Domain
A [auth C], B [auth A], C [auth B], D	IPR001683	Phox homology	Domain
A [auth C], B [auth A], C [auth B], D	IPR001736	Phospholipase D/Transphosphatidylase	Domain
A [auth C], B [auth A], C [auth B], D	IPR036871	PX domain superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth B], D	IPR011993	PH-like domain superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth B], D	IPR025202	Cardiolipin synthase-like, phospholipase D-like domain	Domain
A [auth C], B [auth A], C [auth B], D	IPR016555	Phospholipase D, eukaryotic type	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth C], B [auth A], C [auth B], D	: O14939	Cardiomegaly attention deficit hyperactivity disorder, inattentive type swine influenza brain aneurysm systemic lupus erythematosus

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7SVP | pdb_00007svp

Structure of compound 34 bound to human Phospholipase D2 catalytic domain

External Resource: Annotation

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation