7U3B | pdb_00007u3b

Structure of S. venezuelae GlgX bound to c-di-GMP and acarbose (pH 8.5)

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H [auth J]	Gp23	e7u3bJ1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (develop294)
G [auth I]	Gp23	e7u3bI1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (develop294)
F [auth H]	Gp23	e7u3bH1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (develop294)
E [auth G]	Gp23	e7u3bG1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (develop294)
D [auth F]	Ribosomal_S28e	e7u3bF1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Ribosomal_S28e	ECOD (develop294)
C [auth E]	Gp23	e7u3bE1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (develop294)
B [auth D]	Gp23	e7u3bD1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (develop294)
A [auth C]	Gp23	e7u3bC1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: Gp23	ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H], G [auth I], H [auth J]	Glycogen debranching enzyme GlgX	alpha-glucosidase activity hydrolase activity, acting on glycosyl bonds glucosidase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity amylo-alpha-1,6-glucosidase activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	carbohydrate metabolic process catabolic process glucan catabolic process energy derivation by oxidation of organic compounds glycogen metabolic process carbohydrate catabolic process primary metabolic process generation of precursor metabolites and energy macromolecule catabolic process polysaccharide metabolic process glucan metabolic process glycogen catabolic process polysaccharide catabolic process metabolic process carbohydrate metabolic process catabolic process glucan catabolic process energy derivation by oxidation of organic compounds glycogen metabolic process carbohydrate catabolic process primary metabolic process generation of precursor metabolites and energy macromolecule catabolic process polysaccharide metabolic process glucan metabolic process glycogen catabolic process polysaccharide catabolic process metabolic process cellular process energy reserve metabolic process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H], G [auth I], H [auth J]	IPR011837	Glycogen debranching enzyme, GlgX type	Family
A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H], G [auth I], H [auth J]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H], G [auth I], H [auth J]	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H], G [auth I], H [auth J]	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H], G [auth I], H [auth J]	IPR006047	Glycosyl hydrolase family 13, catalytic domain	Domain
A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H], G [auth I], H [auth J]	IPR044505	Glycogen debranching enzyme GlgX/isoamylase, N-terminal Early set domain	Domain
A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H], G [auth I], H [auth J]	IPR013780	Glycosyl hydrolase, all-beta	Homologous Superfamily
A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H], G [auth I], H [auth J]	IPR004193	Glycoside hydrolase, family 13, N-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.