7VNM | pdb_00007vnm

Rba sphaeroides PufY-KO RC-LH1 monomer


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
AA [auth 0]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
E [auth B]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
K [auth J]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
Q [auth R]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
S [auth T]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
Y [auth 8]SCOP2B SuperfamilyLight-harvesting complex subunits 8076353 3000199 SCOP2B (2022-06-29)
C [auth H]SCOP2B SuperfamilyPhotosystem II reaction centre subunit H, transmembrane region 8100956 3000750 SCOP2B (2022-06-29)
C [auth H]SCOP2B SuperfamilyPRC-barrel domain 8099396 3000637 SCOP2B (2022-06-29)
B [auth M]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8099400 3000736 SCOP2B (2022-06-29)
A [auth L]SCOP2B SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8099398 3000736 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BA [auth X]Peptidase_C30e7vnmX1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
AA [auth 0]Peptidase_C30e7vnm01 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
DA [auth 2]Peptidase_C30e7vnm21 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
E [auth B]Peptidase_C30e7vnmB1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
G [auth E]Peptidase_C30e7vnmE1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
I [auth G]Peptidase_C30e7vnmG1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
K [auth J]Peptidase_C30e7vnmJ1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
M [auth N]Peptidase_C30e7vnmN1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
O [auth P]Peptidase_C30e7vnmP1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
Q [auth R]Peptidase_C30e7vnmR1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
S [auth T]Peptidase_C30e7vnmT1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
U [auth V]Peptidase_C30e7vnmV1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
W [auth C]Peptidase_C30e7vnmC1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
Y [auth 8]Peptidase_C30e7vnm81 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
CA [auth 1]Peptidase_C30e7vnm11 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
D [auth A]Peptidase_C30e7vnmA1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
F [auth D]Peptidase_C30e7vnmD1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
H [auth F]Peptidase_C30e7vnmF1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
J [auth I]Peptidase_C30e7vnmI1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
L [auth K]Peptidase_C30e7vnmK1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
N [auth O]Peptidase_C30e7vnmO1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
P [auth Q]Peptidase_C30e7vnmQ1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
R [auth S]Peptidase_C30e7vnmS1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
T [auth U]Peptidase_C30e7vnmU1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
V [auth W]Peptidase_C30e7vnmW1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
X [auth 7]Peptidase_C30e7vnm71 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
Z [auth 9]Peptidase_C30e7vnm91 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
C [auth H]Peptidase_C30e7vnmH1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
B [auth M]Peptidase_C30e7vnmM1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)
A [auth L]Peptidase_C30e7vnmL1 A: beta barrelsX: Nuclear receptor ligand-binding domainH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Peptidase_C30ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunitDomain
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunitDomain
C [auth H]PF03967Photosynthetic reaction centre, H-chain N-terminal region (PRCH)Photosynthetic reaction centre, H-chain N-terminal region- Family
C [auth H]PF05239PRC-barrel domain (PRC)PRC-barrel domainThe PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, ...The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [1].
Domain
B [auth M]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
A [auth L]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
BA [auth X]Intrinsic membrane protein PufX-
Light-harvesting protein B-875 beta chain
Light-harvesting protein B-875 alpha chain
C [auth H]Reaction center protein H chain
B [auth M]Reaction center protein M chain
A [auth L]Reaction center protein L chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
BA [auth X]IPR020169Intrinsic membrane protein family, PufXFamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR023624Antenna complex, beta domain superfamilyHomologous Superfamily
IPR035889Light-harvesting complexHomologous Superfamily
IPR023623Antenna complex, beta subunit, conserved siteConserved Site
IPR002362Light-harvesting protein B beta chainFamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR018332Antenna complex, alpha subunitFamily
IPR002361Antenna complex, alpha subunit conserved siteConserved Site
IPR035889Light-harvesting complexHomologous Superfamily
C [auth H]IPR014747Bacterial photosynthetic reaction centre, H-chain, C-terminalHomologous Superfamily
C [auth H]IPR015810Photosynthetic reaction centre, H subunit, N-terminalDomain
C [auth H]IPR005652Photosynthetic reaction centre, H subunitFamily
C [auth H]IPR037097Photosynthetic reaction centre, H subunit, N-terminal domain superfamilyHomologous Superfamily
C [auth H]IPR011033PRC-barrel-like superfamilyHomologous Superfamily
C [auth H]IPR027275PRC-barrel domainDomain
B [auth M]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
B [auth M]IPR005781Photosynthetic reaction centre, M subunitFamily
B [auth M]IPR000484Photosynthetic reaction centre, L/MFamily
B [auth M]IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
A [auth L]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A [auth L]IPR000484Photosynthetic reaction centre, L/MFamily
A [auth L]IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
A [auth L]IPR005871Photosynthetic reaction centre, L subunitFamily