7WNX | pdb_00007wnx

Cryo-EM structure of Mycobacterium smegmatis MmpL3 complexed with ST004 in lipid nanodiscs

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Peptidase_M2	e7wnxA01	A: alpha bundles	X: Rossmann-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_M2	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF03176	MMPL family (MMPL)	MMPL family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Trehalose monomycolate exporter MmpL3	binding phospholipid binding lipid binding phosphatidylinositol binding phosphatidylethanolamine binding phospholipid transfer activity lipid transporter activity lipid transfer activity transporter activity phospholipid transporter activity phosphatidylethanolamine transfer activity diacylglycerol binding ion binding anion binding binding phospholipid binding lipid binding phosphatidylinositol binding phosphatidylethanolamine binding phospholipid transfer activity lipid transporter activity lipid transfer activity transporter activity phospholipid transporter activity phosphatidylethanolamine transfer activity diacylglycerol binding ion binding anion binding phosphatidylglycerol binding cardiolipin binding small molecule binding trehalose transmembrane transporter activity disaccharide transmembrane transporter activity oligosaccharide transmembrane transporter activity carbohydrate transmembrane transporter activity transmembrane transporter activity	response to stimulus response to chemical response to xenobiotic stimulus oxoacid metabolic process cell wall organization or biogenesis lipid biosynthetic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process cellular component biogenesis mycolic acid biosynthetic process Actinobacterium-type cell wall biogenesis small molecule metabolic process cellular component organization or biogenesis response to stimulus response to chemical response to xenobiotic stimulus oxoacid metabolic process cell wall organization or biogenesis lipid biosynthetic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process cellular component biogenesis mycolic acid biosynthetic process Actinobacterium-type cell wall biogenesis small molecule metabolic process cellular component organization or biogenesis peptidoglycan-based cell wall biogenesis fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process carboxylic acid metabolic process primary metabolic process fatty acid biosynthetic process macromolecule biosynthetic process cell wall biogenesis biosynthetic process cell wall macromolecule biosynthetic process cellular process metabolic process macromolecule metabolic process monocarboxylic acid metabolic process cell wall macromolecule metabolic process lipid metabolic process biological regulation regulation of biological quality regulation of membrane potential cellular component organization cell wall organization external encapsulating structure organization response to antibiotic localization transport macromolecule localization phospholipid transport lipid localization lipid transport establishment of localization organophosphate ester transport trehalose transport carbohydrate transport oligosaccharide transport disaccharide transport mycolate cell wall layer assembly cellular component assembly	cellular anatomical structure cell tip cell pole cell septum cell periphery plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR004869	Membrane transport protein MMPL domain	Domain
A	IPR050545	HpnN/MmpL-like transporters	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Transmembrane	Alpha-helical polytopic	Resistance-nodulation-cell division	Hopanoid biosynthesis RND transporter

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A	PDBTM	Annotated as membrane protein by PDBTM

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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