7X8X | pdb_00007x8x

structural insights into Mycobacterium tuberculosis ClpP1P2 inhibition by Cediranib: implications for developing antimicrobial agents targeting Clp protease

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
X [auth Z]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
W [auth N]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
V [auth Y]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
U [auth M]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
R [auth W]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
Q [auth K]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
N [auth U]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
M [auth I]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
H [auth R]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
G [auth D]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
D [auth P]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
BA [auth b]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
AA [auth G]	SCOP2B Superfamily	ClpP/crotonase	8038635	3000033	SCOP2B (2022-06-29)
Z [auth a]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
Y [auth E]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
T [auth X]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
S [auth L]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
P [auth V]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
O [auth J]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
L [auth T]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
K [auth H]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
J [auth S]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
I [auth F]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
F [auth Q]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
B [auth O]	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ClpP/crotonase	8068493	3000033	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X [auth Z]	Rhabdo_ncap	e7x8xZ1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
W [auth N]	Rhabdo_ncap	e7x8xN1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
V [auth Y]	Rhabdo_ncap	e7x8xY1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
U [auth M]	Rhabdo_ncap	e7x8xM1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
R [auth W]	Rhabdo_ncap	e7x8xW1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
Q [auth K]	Rhabdo_ncap	e7x8xK1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
N [auth U]	Rhabdo_ncap	e7x8xU1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
M [auth I]	Rhabdo_ncap	e7x8xI1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
H [auth R]	Rhabdo_ncap	e7x8xR1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
G [auth D]	Rhabdo_ncap	e7x8xD1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
D [auth P]	Rhabdo_ncap	e7x8xP1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
C [auth B]	Rhabdo_ncap	e7x8xB1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
BA [auth b]	Rhabdo_ncap	e7x8xb1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
AA [auth G]	Rhabdo_ncap	e7x8xG1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
Z [auth a]	Rhabdo_ncap	e7x8xa1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
Y [auth E]	Rhabdo_ncap	e7x8xE1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
T [auth X]	Rhabdo_ncap	e7x8xX1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
S [auth L]	Rhabdo_ncap	e7x8xL1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
P [auth V]	Rhabdo_ncap	e7x8xV1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
O [auth J]	Rhabdo_ncap	e7x8xJ1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
L [auth T]	Rhabdo_ncap	e7x8xT1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
K [auth H]	Rhabdo_ncap	e7x8xH1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
J [auth S]	Rhabdo_ncap	e7x8xS1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
I [auth F]	Rhabdo_ncap	e7x8xF1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
F [auth Q]	Rhabdo_ncap	e7x8xQ1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
E [auth C]	Rhabdo_ncap	e7x8xC1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
B [auth O]	Rhabdo_ncap	e7x8xO1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)
A	Rhabdo_ncap	e7x8xA1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Rhabdo_ncap	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
X [auth Z]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
W [auth N]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
V [auth Y]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
U [auth M]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
R [auth W]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
Q [auth K]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
N [auth U]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
M [auth I]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
H [auth R]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
G [auth D]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
D [auth P]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
C [auth B]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
BA [auth b]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
AA [auth G]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
Z [auth a]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
Y [auth E]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
T [auth X]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
S [auth L]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
P [auth V]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
O [auth J]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
L [auth T]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
K [auth H]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
J [auth S]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
I [auth F]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
F [auth Q]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
E [auth C]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
B [auth O]	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)
A	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth G], BA [auth b], C [auth B], D [auth P], G [auth D], AA [auth G], BA [auth b], C [auth B], D [auth P], G [auth D], H [auth R], M [auth I], N [auth U], Q [auth K], R [auth W], U [auth M], V [auth Y], W [auth N], X [auth Z]	PF00574	Clp protease (CLP_protease)	Clp protease	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large in ...	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large insertions, Swiss:P42380 contains one large insertion.	Domain
A, B [auth O], E [auth C], F [auth Q], I [auth F], A, B [auth O], E [auth C], F [auth Q], I [auth F], J [auth S], K [auth H], L [auth T], O [auth J], P [auth V], S [auth L], T [auth X], Y [auth E], Z [auth a]	PF00574	Clp protease (CLP_protease)	Clp protease	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large in ...	The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Swiss:P48254 has lost all of these active site residues and is therefore inactive. Swiss:P42379 contains two large insertions, Swiss:P42380 contains one large insertion.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AB [auth 1], BB [auth 2], CA [auth c], CB [auth 3], DA [auth e], AB [auth 1], BB [auth 2], CA [auth c], CB [auth 3], DA [auth e], DB [auth 4], EA [auth f], FA [auth g], GA [auth h], HA [auth i], IA [auth j], JA [auth k], KA [auth l], LA [auth m], MA [auth n], NA [auth o], OA [auth p], PA [auth q], QA [auth r], RA [auth s], SA [auth t], TA [auth u], UA [auth v], VA [auth w], WA [auth x], XA [auth y], YA [auth z], ZA [auth 0]	4-[[3,5-bis(fluoranyl)phenyl]methyl]-N-[(4-bromophenyl)methyl]piperazine-1-carboxamide	-	-	-
AA [auth G], BA [auth b], C [auth B], D [auth P], G [auth D], AA [auth G], BA [auth b], C [auth B], D [auth P], G [auth D], H [auth R], M [auth I], N [auth U], Q [auth K], R [auth W], U [auth M], V [auth Y], W [auth N], X [auth Z]	ATP-dependent Clp protease proteolytic subunit 1	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity ATPase binding protein binding binding enzyme binding	catabolic process metabolic process cellular process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process protein quality control for misfolded or incompletely synthesized proteins macromolecule catabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane endopeptidase Clp complex protein-containing complex catalytic complex
A, B [auth O], E [auth C], F [auth Q], I [auth F], A, B [auth O], E [auth C], F [auth Q], I [auth F], J [auth S], K [auth H], L [auth T], O [auth J], P [auth V], S [auth L], T [auth X], Y [auth E], Z [auth a]	ATP-dependent Clp protease proteolytic subunit 2	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity ATPase binding protein binding binding enzyme binding	catabolic process metabolic process cellular process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process protein quality control for misfolded or incompletely synthesized proteins macromolecule catabolic process	endopeptidase Clp complex protein-containing complex catalytic complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane external encapsulating structure cell wall peptidoglycan-based cell wall

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth G], BA [auth b], C [auth B], D [auth P], G [auth D], AA [auth G], BA [auth b], C [auth B], D [auth P], G [auth D], H [auth R], M [auth I], N [auth U], Q [auth K], R [auth W], U [auth M], V [auth Y], W [auth N], X [auth Z]	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
AA [auth G], BA [auth b], C [auth B], D [auth P], G [auth D], AA [auth G], BA [auth b], C [auth B], D [auth P], G [auth D], H [auth R], M [auth I], N [auth U], Q [auth K], R [auth W], U [auth M], V [auth Y], W [auth N], X [auth Z]	IPR001907	ATP-dependent Clp protease proteolytic subunit	Family
AA [auth G], BA [auth b], C [auth B], D [auth P], G [auth D], AA [auth G], BA [auth b], C [auth B], D [auth P], G [auth D], H [auth R], M [auth I], N [auth U], Q [auth K], R [auth W], U [auth M], V [auth Y], W [auth N], X [auth Z]	IPR033135	ClpP, histidine active site	Active Site
AA [auth G], BA [auth b], C [auth B], D [auth P], G [auth D], AA [auth G], BA [auth b], C [auth B], D [auth P], G [auth D], H [auth R], M [auth I], N [auth U], Q [auth K], R [auth W], U [auth M], V [auth Y], W [auth N], X [auth Z]	IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Family
A, B [auth O], E [auth C], F [auth Q], I [auth F], A, B [auth O], E [auth C], F [auth Q], I [auth F], J [auth S], K [auth H], L [auth T], O [auth J], P [auth V], S [auth L], T [auth X], Y [auth E], Z [auth a]	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
A, B [auth O], E [auth C], F [auth Q], I [auth F], A, B [auth O], E [auth C], F [auth Q], I [auth F], J [auth S], K [auth H], L [auth T], O [auth J], P [auth V], S [auth L], T [auth X], Y [auth E], Z [auth a]	IPR001907	ATP-dependent Clp protease proteolytic subunit	Family
A, B [auth O], E [auth C], F [auth Q], I [auth F], A, B [auth O], E [auth C], F [auth Q], I [auth F], J [auth S], K [auth H], L [auth T], O [auth J], P [auth V], S [auth L], T [auth X], Y [auth E], Z [auth a]	IPR018215	ClpP, Ser active site	Active Site
A, B [auth O], E [auth C], F [auth Q], I [auth F], A, B [auth O], E [auth C], F [auth Q], I [auth F], J [auth S], K [auth H], L [auth T], O [auth J], P [auth V], S [auth L], T [auth X], Y [auth E], Z [auth a]	IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Family
A, B [auth O], E [auth C], F [auth Q], I [auth F], A, B [auth O], E [auth C], F [auth Q], I [auth F], J [auth S], K [auth H], L [auth T], O [auth J], P [auth V], S [auth L], T [auth X], Y [auth E], Z [auth a]	IPR033135	ClpP, histidine active site	Active Site