Annotations: 7YUN

Crystal structure of human BEND6 BEN domain in complex with methylated DNA

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Ald_Xan_dh_C	e7yunB1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Ald_Xan_dh_C	ECOD (v295.2)
A	Ald_Xan_dh_C	e7yunA1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Ald_Xan_dh_C	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.10.2590	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	BEN domain	CATH (utative)
A	1.10.10.2590	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	BEN domain	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF10523	BEN domain (BEN)	BEN domain	The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, in the chordopoxvirus virosomal protein E5R and in several proteins of polydnaviruses. Computational analysis suggests that the BEN do ...	The BEN domain is found in diverse animal proteins such as BANP/SMAR1, NAC1 and the Drosophila mod(mdg4) isoform C, in the chordopoxvirus virosomal protein E5R and in several proteins of polydnaviruses. Computational analysis suggests that the BEN domain mediates protein-DNA and protein-protein interactions during chromatin organisation and transcription [1]. The BEN domain-containing protein 3 (BEND3) is shown to interact (via BEN domains 1 and 3) with ERCC6L (via N-terminal TPR repeat and SNF2 HeliC region of ERCC6L) which stimulates the ERCC6L translocase and ATPase activities [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	DNA (5'-D(CPTPCPTPCPGP(5CM)PGPAPGPAPG)-3')	-	-	-
A, B	BEN domain-containing protein 6	DNA binding binding nucleic acid binding chromatin binding transcription corepressor activity transcription regulator activity transcription coregulator activity	multicellular organismal process regulation of cellular process cellular developmental process regulation of developmental process positive regulation of biological process regulation of cell differentiation positive regulation of neuron differentiation positive regulation of developmental process neurogenesis multicellular organism development neuron differentiation positive regulation of cell differentiation cell differentiation anatomical structure development multicellular organismal process regulation of cellular process cellular developmental process regulation of developmental process positive regulation of biological process regulation of cell differentiation positive regulation of neuron differentiation positive regulation of developmental process neurogenesis multicellular organism development neuron differentiation positive regulation of cell differentiation cell differentiation anatomical structure development positive regulation of cellular process system development developmental process regulation of biological process biological regulation nervous system development generation of neurons cellular process animal gross anatomical part developmental process regulation of neuron differentiation cellular response to stimulus response to stimulus negative regulation of signaling signaling negative regulation of biological process regulation of signal transduction negative regulation of cell communication cell communication negative regulation of cellular process signal transduction regulation of signaling cell surface receptor signaling pathway negative regulation of response to stimulus negative regulation of signal transduction Notch signaling pathway negative regulation of Notch signaling pathway regulation of response to stimulus regulation of Notch signaling pathway regulation of cell communication	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR037496	BEN domain-containing protein 6-like	Family
A, B	IPR018379	BEN domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	: Q5SZJ8	astrocytic tumor large cell medulloblastoma malignant glioma ovarian cancer pituitary cancer atypical teratoid rhabdoid tumor lung carcinoma medulloblastoma Pick disease primitive neuroectodermal tumor glioblastoma malignant ependymoma oligodendroglioma pilocytic astrocytoma