Annotations: 7ZL8

NME1 in complex with succinyl-CoA

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Serpin	e7zl8L1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
K	Serpin	e7zl8K1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
J	Serpin	e7zl8J1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
I	Serpin	e7zl8I1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
H	Serpin	e7zl8H1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
G	Serpin	e7zl8G1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
F	Serpin	e7zl8F1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
E	HGTP_anticodon	e7zl8E1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: HGTP_anticodon	ECOD (v295)
D	Serpin	e7zl8D1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
C	Serpin	e7zl8C1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
B	Serpin	e7zl8B1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
A	Serpin	e7zl8A1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF00334	Nucleoside diphosphate kinase (NDK)	Nucleoside diphosphate kinase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Nucleoside diphosphate kinase A	kinase activity transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups binding intermediate filament binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding kinase activity transferase activity catalytic activity transferase activity, transferring phosphorus-containing groups binding intermediate filament binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding ADP binding nucleobase-containing compound kinase activity phosphotransferase activity, phosphate group as acceptor nucleoside diphosphate kinase activity identical protein binding protein binding farnesyl diphosphate kinase activity succinyl-CoA binding acyl-CoA binding sulfur compound binding DNA endonuclease activity endonuclease activity catalytic activity, acting on DNA nuclease activity catalytic activity, acting on a nucleic acid DNA nuclease activity catalytic activity, acting on a protein protein kinase activity protein serine kinase activity phosphotransferase activity, alcohol group as acceptor sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription regulatory region nucleic acid binding DNA exonuclease activity 3'-5' exonuclease activity hydrolase activity DNA exonuclease activity, producing 5'-phosphomonoesters hydrolase activity, acting on ester bonds 3'-5'-DNA exonuclease activity exonuclease activity cation binding magnesium ion binding metal ion binding cytoskeletal protein binding gamma-tubulin binding tubulin binding guanyl nucleotide binding GDP binding guanyl ribonucleotide binding kinase binding enzyme binding protein kinase binding coenzyme A binding acetyl-CoA binding protein serine/threonine kinase activity phosphotransferase activity, nitrogenous group as acceptor protein histidine kinase activity single-stranded DNA binding ribonucleoprotein complex binding protein-containing complex binding ribosomal small subunit binding ribosome binding	catabolic process primary metabolic process DNA metabolic process nucleic acid metabolic process macromolecule catabolic process nucleobase-containing compound catabolic process nucleobase-containing compound metabolic process DNA catabolic process nucleic acid catabolic process metabolic process cellular process macromolecule metabolic process pyrimidine deoxyribonucleotide metabolic process deoxyribose phosphate biosynthetic process catabolic process primary metabolic process DNA metabolic process nucleic acid metabolic process macromolecule catabolic process nucleobase-containing compound catabolic process nucleobase-containing compound metabolic process DNA catabolic process nucleic acid catabolic process metabolic process cellular process macromolecule metabolic process pyrimidine deoxyribonucleotide metabolic process deoxyribose phosphate biosynthetic process nucleotide biosynthetic process carbohydrate derivative metabolic process pyrimidine nucleotide metabolic process pyrimidine deoxyribonucleoside monophosphate metabolic process pyrimidine deoxyribonucleotide biosynthetic process nucleobase-containing small molecule metabolic process dTMP metabolic process deoxyribonucleoside monophosphate biosynthetic process dTMP biosynthetic process small molecule metabolic process pyrimidine deoxyribonucleoside monophosphate biosynthetic process pyrimidine-containing compound biosynthetic process nucleoside monophosphate metabolic process phosphorus metabolic process nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process pyrimidine nucleoside monophosphate metabolic process pyrimidine-containing compound metabolic process 2'-deoxyribonucleotide metabolic process 2'-deoxyribonucleotide biosynthetic process nucleotide metabolic process nucleobase-containing compound biosynthetic process nucleoside monophosphate biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process pyrimidine nucleoside monophosphate biosynthetic process pyrimidine nucleotide biosynthetic process developmental process mammary gland development gland development animal organ development anatomical structure development animal gross anatomical part developmental process ribose phosphate metabolic process purine ribonucleotide biosynthetic process purine ribonucleoside triphosphate biosynthetic process ribonucleotide biosynthetic process purine nucleotide metabolic process ribonucleotide metabolic process purine nucleoside triphosphate biosynthetic process purine-containing compound biosynthetic process purine ribonucleoside triphosphate metabolic process ITP biosynthetic process ribose phosphate biosynthetic process purine nucleoside triphosphate metabolic process nucleoside triphosphate biosynthetic process ribonucleoside triphosphate biosynthetic process purine-containing compound metabolic process nucleoside triphosphate metabolic process purine ribonucleotide metabolic process ITP metabolic process purine nucleotide biosynthetic process regulation of neuron projection development multicellular organismal process regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization cellular developmental process cell projection organization positive regulation of biological process cell development neuron projection development cellular component organization neurogenesis multicellular organism development neuron differentiation positive regulation of neuron projection development cell differentiation positive regulation of cell projection organization cellular component organization or biogenesis positive regulation of cellular process system development regulation of biological process plasma membrane bounded cell projection organization regulation of cell projection organization biological regulation nervous system development generation of neurons neuron development regulation of plasma membrane bounded cell projection organization pyrimidine ribonucleoside triphosphate biosynthetic process pyrimidine nucleoside triphosphate biosynthetic process pyrimidine ribonucleotide metabolic process pyrimidine nucleoside triphosphate metabolic process pyrimidine ribonucleoside triphosphate metabolic process UTP biosynthetic process UTP metabolic process pyrimidine ribonucleotide biosynthetic process regulation of body fluid levels secretion transport establishment of localization body fluid secretion localization lactation regulation of biological quality isoprenoid metabolic process lipid metabolic process cellular component biogenesis protein hexamerization cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly import into cell endocytosis vesicle-mediated transport cell population proliferation positive regulation of cell population proliferation positive regulation of epithelial cell proliferation regulation of cell population proliferation regulation of epithelial cell proliferation epithelial cell proliferation oxoacid metabolic process ketone metabolic process regulation of lipid metabolic process lipid biosynthetic process carboxylic acid biosynthetic process regulation of primary metabolic process regulation of small molecule metabolic process regulation of biosynthetic process fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process carboxylic acid metabolic process fatty acid biosynthetic process regulation of ketone metabolic process regulation of fatty acid biosynthetic process regulation of fatty acid metabolic process regulation of lipid biosynthetic process monocarboxylic acid metabolic process regulation of metabolic process GTP metabolic process GTP biosynthetic process cellular component disassembly cell death execution phase of apoptosis apoptotic DNA fragmentation cellular component disassembly involved in execution phase of apoptosis apoptotic nuclear changes apoptotic process programmed cell death organophosphate catabolic process purine-containing compound catabolic process nucleoside phosphate catabolic process acetyl-CoA metabolic process sulfur compound catabolic process acyl-CoA metabolic process sulfur compound metabolic process acetyl-CoA catabolic process CTP biosynthetic process CTP metabolic process negative regulation of metabolic process negative regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of cellular process regulation of macromolecule biosynthetic process negative regulation of macromolecule metabolic process nucleoside diphosphate metabolic process regulation of leukocyte differentiation myeloid leukocyte differentiation regulation of developmental process regulation of cell differentiation regulation of cell development negative regulation of cell differentiation regulation of immune system process regulation of multicellular organismal process negative regulation of hemopoiesis regulation of multicellular organismal development negative regulation of leukocyte differentiation negative regulation of developmental process hemopoiesis regulation of myeloid cell differentiation negative regulation of myeloid cell differentiation regulation of myeloid leukocyte differentiation negative regulation of myeloid leukocyte differentiation negative regulation of cell development myeloid cell differentiation negative regulation of immune system process immune system process regulation of hemopoiesis negative regulation of multicellular organismal process leukocyte differentiation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol perinuclear region of cytoplasm membrane-bounded organelle mitochondrial membrane mitochondrion membrane organelle outer membrane intracellular membrane-bounded organelle intracellular organelle organelle envelope bounding membrane of organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol perinuclear region of cytoplasm membrane-bounded organelle mitochondrial membrane mitochondrion membrane organelle outer membrane intracellular membrane-bounded organelle intracellular organelle organelle envelope bounding membrane of organelle organelle mitochondrial envelope mitochondrial outer membrane outer membrane organelle membrane myelin sheath ruffle cell leading edge plasma membrane leading edge membrane plasma membrane bounded cell projection cell periphery cell projection ruffle membrane plasma membrane region cell projection membrane polymeric cytoskeletal fiber intracellular membraneless organelle intermediate filament cytoskeleton cytoskeleton membraneless organelle intermediate filament supramolecular fiber supramolecular polymer supramolecular complex centrosome microtubule organizing center microtubule cytoskeleton early endosome endosome intracellular vesicle endomembrane system cytoplasmic vesicle vesicle nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR023005	Nucleoside diphosphate kinase, active site	Active Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR034907	Nucleoside diphosphate kinase-like domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR001564	Nucleoside diphosphate kinase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036850	Nucleoside diphosphate kinase-like domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

7ZL8 | pdb_00007zl8

NME1 in complex with succinyl-CoA

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage