8EFR | pdb_00008efr

CryoEM of the soluble OPA1 interfaces with GDP-AlFx bound from the helical assembly on a lipid membrane

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
R	Ferritin	e8efrR1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ferritin	ECOD (v295)
Q [auth J]	Ferritin	e8efrJ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ferritin	ECOD (v295)
P [auth Q]	Ferritin	e8efrQ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ferritin	ECOD (v295)
O [auth I]	Ferritin	e8efrI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ferritin	ECOD (v295)
N [auth P]	Ferritin	e8efrP1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ferritin	ECOD (v295)
M [auth H]	Ferritin	e8efrH1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ferritin	ECOD (v295)
L [auth O]	Ferritin	e8efrO1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ferritin	ECOD (v295)
K [auth G]	Ferritin	e8efrG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ferritin	ECOD (v295)
J [auth N]	Ferritin	e8efrN1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ferritin	ECOD (v295)
I [auth F]	Ferritin	e8efrF1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ferritin	ECOD (v295)
H [auth M]	Ferritin	e8efrM1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ferritin	ECOD (v295)
G [auth E]	Ferritin	e8efrE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ferritin	ECOD (v295)
F [auth L]	Ferritin	e8efrL1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ferritin	ECOD (v295)
E [auth D]	Ferritin	e8efrD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ferritin	ECOD (v295)
D [auth K]	Ferritin	e8efrK1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ferritin	ECOD (v295)
C	Ferritin	e8efrC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ferritin	ECOD (v295)
B	Ferritin	e8efrB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ferritin	ECOD (v295)
A	Ferritin	e8efrA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ferritin	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D [auth K], E [auth D], A, B, C, D [auth K], E [auth D], F [auth L], G [auth E], H [auth M], I [auth F], J [auth N], K [auth G], L [auth O], M [auth H], N [auth P], O [auth I], P [auth Q], Q [auth J], R	PF19434	Dynamin-like GTPase OPA1 C-terminal (OPA1_C)	Dynamin-like GTPase OPA1 C-terminal	This entry represents the C-terminal domain of Dynamin-like GTPase OPA1. This protein is involved in mitochondrial fusion and inner membrane remodelling, essential for normal mitochondrial morphology by regulating the equilibrium between mitochondria ...	This entry represents the C-terminal domain of Dynamin-like GTPase OPA1. This protein is involved in mitochondrial fusion and inner membrane remodelling, essential for normal mitochondrial morphology by regulating the equilibrium between mitochondrial fusion and mitochondrial fission [1,2,3]. Mutations in human OPA1 cause optic atrophy [3]. This domain includes the helix bundle (HB) domains HB1 (C-terminal) and HB2 (equivalent to extreme C-terminal bundle signaling element (BSE) and to the stalk domain of dynamin-1, respectively) and the lipid-interacting stalk (LIS, equivalent to the PH domain of dynamin-1) [3].	Domain
A, B, C, D [auth K], E [auth D], A, B, C, D [auth K], E [auth D], F [auth L], G [auth E], H [auth M], I [auth F], J [auth N], K [auth G], L [auth O], M [auth H], N [auth P], O [auth I], P [auth Q], Q [auth J], R	PF00350	Dynamin family (Dynamin_N)	Dynamin family		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D [auth K], E [auth D], A, B, C, D [auth K], E [auth D], F [auth L], G [auth E], H [auth M], I [auth F], J [auth N], K [auth G], L [auth O], M [auth H], N [auth P], O [auth I], P [auth Q], Q [auth J], R	Dynamin-like 120 kDa protein, form S1	membrane bending activity ion binding binding anion binding phosphatidic acid binding phospholipid binding lipid binding small molecule binding phosphatidylglycerol binding cardiolipin binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding membrane bending activity ion binding binding anion binding phosphatidic acid binding phospholipid binding lipid binding small molecule binding phosphatidylglycerol binding cardiolipin binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding cation binding magnesium ion binding metal ion binding cytoskeletal protein binding microtubule binding protein binding tubulin binding pyrophosphatase activity GTPase activity fusogenic activity GTPase-dependent fusogenic activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly cellular process cellular component organization or biogenesis establishment of organelle localization cellular localization organelle transport along microtubule transport establishment of mitochondrion localization intracellular transport cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly cellular process cellular component organization or biogenesis establishment of organelle localization cellular localization organelle transport along microtubule transport establishment of mitochondrion localization intracellular transport axonal transport establishment of localization localization mitochondrion localization establishment of mitochondrion localization, microtubule-mediated axo-dendritic transport mitochondrion transport along microtubule organelle localization establishment of localization in cell microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process axonal transport of mitochondrion membrane organization inner mitochondrial membrane organization mitochondrial inner membrane fusion organelle fusion mitochondrial membrane organization organelle organization mitochondrial fusion mitochondrion organization regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death cellular response to stimulus response to stimulus signaling negative regulation of signaling negative regulation of intracellular signal transduction regulation of cellular response to stress regulation of response to endoplasmic reticulum stress negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway regulation of signal transduction intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress regulation of intrinsic apoptotic signaling pathway intracellular signal transduction negative regulation of cell communication cell communication regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway cellular response to stress regulation of intracellular signal transduction regulation of response to stress response to stress negative regulation of apoptotic signaling pathway signal transduction intrinsic apoptotic signaling pathway response to endoplasmic reticulum stress negative regulation of response to endoplasmic reticulum stress regulation of signaling negative regulation of response to stimulus negative regulation of signal transduction apoptotic signaling pathway negative regulation of intrinsic apoptotic signaling pathway regulation of response to stimulus regulation of cell communication regulation of apoptotic signaling pathway peroxisome organization peroxisome fission organelle fission cellular senescence adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of alpha-beta T cell activation regulation of leukocyte activation regulation of cell activation positive regulation of T cell differentiation regulation of cell development multicellular organism development positive regulation of immune response T cell activation cell differentiation regulation of T-helper cell differentiation alpha-beta T cell activation regulation of immune system process positive regulation of CD4-positive, alpha-beta T cell differentiation immune response T-helper cell differentiation alpha-beta T cell lineage commitment positive regulation of cell development immune effector process regulation of leukocyte cell-cell adhesion T-helper 17 cell differentiation cell fate commitment CD4-positive or CD8-positive, alpha-beta T cell lineage commitment positive regulation of alpha-beta T cell differentiation regulation of developmental process positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains cell development positive regulation of leukocyte cell-cell adhesion CD4-positive, alpha-beta T cell differentiation positive regulation of T-helper 17 cell differentiation positive regulation of T-helper cell differentiation positive regulation of cell-cell adhesion regulation of T cell differentiation positive regulation of lymphocyte activation alpha-beta T cell differentiation T cell activation involved in immune response positive regulation of cell differentiation leukocyte activation involved in immune response positive regulation of immune effector process regulation of cell-cell adhesion positive regulation of cellular process regulation of T-helper 17 cell differentiation hemopoiesis regulation of cell adhesion cell activation positive regulation of T-helper 17 type immune response regulation of CD4-positive, alpha-beta T cell activation immune system process regulation of lymphocyte activation regulation of immune effector process multicellular organismal process regulation of leukocyte differentiation mononuclear cell differentiation regulation of cell differentiation lymphocyte differentiation cell activation involved in immune response positive regulation of developmental process positive regulation of cell activation positive regulation of T-helper 17 cell lineage commitment anatomical structure development positive regulation of leukocyte activation T cell differentiation positive regulation of adaptive immune response CD4-positive, alpha-beta T cell lineage commitment positive regulation of immune system process developmental process positive regulation of T cell activation regulation of adaptive immune response T-helper cell lineage commitment T-helper 17 cell lineage commitment positive regulation of alpha-beta T cell activation regulation of immune response positive regulation of multicellular organismal process leukocyte differentiation cellular developmental process positive regulation of biological process regulation of CD4-positive, alpha-beta T cell differentiation regulation of alpha-beta T cell differentiation lymphocyte activation leukocyte cell-cell adhesion leukocyte activation positive regulation of response to stimulus positive regulation of CD4-positive, alpha-beta T cell activation cell adhesion regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains cell-cell adhesion alpha-beta T cell activation involved in immune response positive regulation of hemopoiesis CD4-positive, alpha-beta T cell activation regulation of multicellular organismal process lymphocyte activation involved in immune response positive regulation of cell fate commitment regulation of lymphocyte differentiation regulation of multicellular organismal development regulation of T-helper 17 cell lineage commitment regulation of T-helper 17 type immune response regulation of cell fate commitment positive regulation of cell adhesion regulation of T cell activation T cell differentiation involved in immune response T cell lineage commitment adaptive immune response positive T cell selection regulation of hemopoiesis positive regulation of leukocyte differentiation T cell selection positive regulation of lymphocyte differentiation T-helper 17 type immune response regulation of cellular component organization apoptotic mitochondrial changes regulation of release of cytochrome c from mitochondria negative regulation of release of cytochrome c from mitochondria negative regulation of cellular component organization regulation of organelle organization release of cytochrome c from mitochondria negative regulation of organelle organization regulation of mitochondrion organization membrane tubulation sensory perception of light stimulus system process sensory perception nervous system process visual perception positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process cytokine production regulation of cytokine production positive regulation of macromolecule metabolic process interleukin-17 production regulation of biosynthetic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression regulation of interleukin-17 production biosynthetic process positive regulation of gene expression metabolic process regulation of macromolecule biosynthetic process positive regulation of interleukin-17 production macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process nucleoside phosphate metabolic process ribose phosphate metabolic process purine nucleoside triphosphate metabolic process GTP metabolic process carbohydrate derivative metabolic process primary metabolic process nucleotide metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process purine nucleotide metabolic process ribonucleotide metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process purine ribonucleoside triphosphate metabolic process small molecule metabolic process nucleoside triphosphate metabolic process purine ribonucleotide metabolic process phosphorus metabolic process mitochondrial fission cristae formation	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane organelle inner membrane membrane mitochondrial inner membrane organelle envelope mitochondrial envelope organelle membrane mitochondrial crista somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection organelle outer membrane bounding membrane of organelle mitochondrial outer membrane outer membrane polymeric cytoskeletal fiber intracellular membraneless organelle cytoskeleton membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton mitochondrial intermembrane space membrane-enclosed lumen intracellular organelle lumen organelle envelope lumen organelle lumen neuron projection cytoplasm axon axon cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D [auth K], E [auth D], A, B, C, D [auth K], E [auth D], F [auth L], G [auth E], H [auth M], I [auth F], J [auth N], K [auth G], L [auth O], M [auth H], N [auth P], O [auth I], P [auth Q], Q [auth J], R	IPR001401	Dynamin, GTPase domain	Domain
A, B, C, D [auth K], E [auth D], A, B, C, D [auth K], E [auth D], F [auth L], G [auth E], H [auth M], I [auth F], J [auth N], K [auth G], L [auth O], M [auth H], N [auth P], O [auth I], P [auth Q], Q [auth J], R	IPR045817	Dynamin-like GTPase OPA1, C-terminal	Domain
A, B, C, D [auth K], E [auth D], A, B, C, D [auth K], E [auth D], F [auth L], G [auth E], H [auth M], I [auth F], J [auth N], K [auth G], L [auth O], M [auth H], N [auth P], O [auth I], P [auth Q], Q [auth J], R	IPR045063	Dynamin, N-terminal	Domain
A, B, C, D [auth K], E [auth D], A, B, C, D [auth K], E [auth D], F [auth L], G [auth E], H [auth M], I [auth F], J [auth N], K [auth G], L [auth O], M [auth H], N [auth P], O [auth I], P [auth Q], Q [auth J], R	IPR030381	Dynamin-type guanine nucleotide-binding (G) domain	Domain
A, B, C, D [auth K], E [auth D], A, B, C, D [auth K], E [auth D], F [auth L], G [auth E], H [auth M], I [auth F], J [auth N], K [auth G], L [auth O], M [auth H], N [auth P], O [auth I], P [auth Q], Q [auth J], R	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C, D [auth K], E [auth D], A, B, C, D [auth K], E [auth D], F [auth L], G [auth E], H [auth M], I [auth F], J [auth N], K [auth G], L [auth O], M [auth H], N [auth P], O [auth I], P [auth Q], Q [auth J], R	IPR022812	Dynamin	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D [auth K], E [auth D], A, B, C, D [auth K], E [auth D], F [auth L], G [auth E], H [auth M], I [auth F], J [auth N], K [auth G], L [auth O], M [auth H], N [auth P], O [auth I], P [auth Q], Q [auth J], R	: O60313	Behr syndrome optic atrophy with or without deafness, ophthalmoplegia, myopathy, ataxia, and neuropathy mitochondrial DNA depletion syndrome 14 (cardioencephalomyopathic type) autosomal dominant optic atrophy plus syndrome autosomal dominant optic atrophy, classic form autosomal dominant optic atrophy cardiomyopathy neurodegenerative disease Osteoarthrosis Deformans Pick disease astrocytic tumor schizophrenia breast cancer dental caries glioblastoma Behr syndrome optic atrophy with or without deafness, ophthalmoplegia, myopathy, ataxia, and neuropathy mitochondrial DNA depletion syndrome 14 (cardioencephalomyopathic type) autosomal dominant optic atrophy plus syndrome autosomal dominant optic atrophy, classic form autosomal dominant optic atrophy cardiomyopathy neurodegenerative disease Osteoarthrosis Deformans Pick disease astrocytic tumor schizophrenia breast cancer dental caries glioblastoma malignant glioma oligodendroglioma osteoarthritis osteosarcoma pilocytic astrocytoma atypical teratoid rhabdoid tumor tuberculosis glaucoma, normal tension, susceptibility to large cell medulloblastoma malignant mesothelioma osteoarthritis susceptibility 1 ovarian cancer progressive external ophthalmoplegia malignant ependymoma medulloblastoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.