8EMY | pdb_00008emy

Structure of GII.4 norovirus in complex with Nanobody 82

External Resource: Annotation

Domain Annotation: ECOD Classification
SAbDab Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Ion_trans	e8emyL1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Ion_trans	ECOD (v295)
K	Ion_trans	e8emyK1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Ion_trans	ECOD (v295)
J	Ion_trans	e8emyJ1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Ion_trans	ECOD (v295)
I	Ion_trans	e8emyI1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Ion_trans	ECOD (v295)
H	Ion_trans	e8emyH1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Ion_trans	ECOD (v295)
G	Ion_trans	e8emyG1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Ion_trans	ECOD (v295)
F	Ion_trans	e8emyF1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Ion_trans	ECOD (v295)
E	Ion_trans	e8emyE1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Ion_trans	ECOD (v295)
D	Ion_trans	e8emyD1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Ion_trans	ECOD (v295)
C	Ion_trans	e8emyC1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Ion_trans	ECOD (v295)
B	Ion_trans	e8emyB1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Ion_trans	ECOD (v295)
A	Ion_trans	e8emyA1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Ion_trans	ECOD (v295)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
G, H, I, J, K G, H, I, J, K, L	Heavy Chain	IGHV3	-	gii.4 p domain	SAbDab (2026-06-26)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G, H, I, J, K G, H, I, J, K, L	Nanobody 82	-	-	-
A, B, C, D, E A, B, C, D, E, F	GII.4 P domain	-	-	virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR029053	Viral coat protein subunit	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR004005	Calicivirus coat protein	Domain
A, B, C, D, E A, B, C, D, E, F	IPR013643	Calicivirus coat protein C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F	IPR033703	Picornavirus/Calicivirus coat protein	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.